RNA id: TU59050



Basic Information


Item Value
RNA id TU59050
length 355
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G44028
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36152478 ~ 36152832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAAAGTATCGAGAAATAGACACAGTACAATCCATAGACCTAGTTACTGTAACCAGAAaataagtctgaggttatttgcgaggtgtctgccagccagtttatgttatgttagcaagcaaactttagcacaactgcccacaaagtactgcttgctgatgaagtgctaatttcaaaacgttactgacataaagacactttacaaacagataaccccgtcattgtaaccaaaatatgtctgagtttatttgcaaagcttatgtcagtgaactagcatgttgctactccccacagtaggctgcttgaaacaccgactatcaacacacaggatgacttgaccaatcacagtccttgcggtc

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU59026 lncRNA upstream 171109 35907077 ~ 35981369 (+) True G44004
TU59023 lncRNA upstream 260349 35891917 ~ 35892129 (+) True G44001
TU59021 lncRNA upstream 268229 35884019 ~ 35884249 (+) True G43999
TU59003 lncRNA upstream 404144 35748056 ~ 35748334 (+) True G43983
XR_005638885.1 lncRNA upstream 462561 35676198 ~ 35689917 (+) True LOC120556668
TU59053 lncRNA downstream 3979 36156811 ~ 36157488 (+) True G44031
TU59054 lncRNA downstream 4722 36157554 ~ 36157817 (+) True G44032
TU59060 lncRNA downstream 17821 36170653 ~ 36173566 (+) False G44036
TU59059 lncRNA downstream 18651 36171483 ~ 36173566 (+) True G44036
TU59073 lncRNA downstream 57845 36210677 ~ 36210973 (+) True G44044
XM_039796794.1 mRNA upstream 632530 35517738 ~ 35519948 (+) True LOC120556919
XM_039796790.1 mRNA upstream 679152 35470994 ~ 35473326 (+) True tp53rk
XM_039797836.1 mRNA upstream 700159 35426361 ~ 35452319 (+) False LOC120557477
XM_039796861.1 mRNA downstream 29760 36182592 ~ 36210487 (+) True sypl2a
XM_039797092.1 mRNA downstream 63253 36216085 ~ 36242866 (+) True atxn7l2a
XM_039797093.1 mRNA downstream 90825 36243657 ~ 36249486 (+) True LOC120557073
XM_039797095.1 mRNA downstream 92229 36245061 ~ 36249486 (+) False LOC120557073
XM_039796899.1 mRNA downstream 149114 36301946 ~ 36327932 (+) True camk1ga
unassigned_transcript_220 other upstream 189868 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 486437 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 666243 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 712339 35439977 ~ 35440139 (+) True LOC120558245
TU58590 other upstream 1485296 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 2013350 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 2459805 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 2747740 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 2800286 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 3661128 39813960 ~ 39821908 (+) False G44581

Expression Profile


TU59050 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

TU59050 Expression in each Bioproject

Bar chart with 8 bars.
TU59050 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.