RNA id: TU59123


Basic Information

Item Value
RNA id TU59123
length 2498
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G44092
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36376971 ~ 36379468 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAATTATCAATACAATACtggtttttatatttattttatttttcagtttcacCCCTCAGAAATATGCCCATTACGGCTACTCGTCTATTTACTTCAGCTGACAATACTTGATTGATTTAAGTTGATCAATTAGCAGGAATCTTTGTTGTAATTTGCTATGTTTACTTTGTCATACAATAGCATGTTAGAAGTTCATACTTACTGTACTTACCATAAGGTTTTCCCTACAAAATGTTGATATACAACTGCTTGCTATACACTGAGTGACTTTGTGCTCTATTATTCAAACTCCACATTGGCTTACATGTGGAACAGTGGACTGCTGGTGGAGAGAGTGGAAAGTTCGAAGGAATTTCTCCAAGGGAGAACAGCTGTTGTCACTAGGTGGGTAACTTTGTAGTTCTGGAGCTGATTCCTCAGCATGTGTCCATGGCAAACATTTGGTCCAAGCTGTGGACTGGAGGTGTAGTTTCACTGCATGACTAAATTGTTTCCTCTACGGCAGAGCAGAAAAGCACTTTTATATACAAACTAACATGACTTAAAAACTGTTCACACCAACAAGTTAACACTATCATGACAGCTGGCCAagccttaaaggtgccctgccatacaaaaccgtttttacttgcatttcttgaaatatgttaggtccatatgtgtttgtgttatgttgtgaatgtgaaaatgaactgctacctcctttgtcagctctagtcactgaaaagaaataagcagagagaaatcaggccaattacaaaagctggtcagtctgacatcatactgcctgagctcattactattcatgagctcgcccagttgggctgggtaaaggattctcattggctagctgttagccaatcagattcaaacagcttagcttgttgaatattaatgagaactggcagaaatcgagtcttcctgtaggctttctataccatgctagaatggcttgaaacaaggtaaccaaggcattttttccacaaaaaatgttacagagtccatggtagaacttcagacattaccacaaagtaataaaatacgtgtgacagggcacctttaaaggcCGAACTTCTCAAACGTCATAAGCAATCTCTTCCACAGAATGTGCTACCATCACAATATGTAAGAGATAACTACAAAACAGGCTGAATGTGCTGTTAACAAAAAGAACACTTaagtccagttcagaccaaagatttgcgacgaGACGAGTTGAAACGTGCGACTTCTTGCAATGCGTCTTCTTCTTGCATAGTCCGCAGCGTtctaaaacctgccagttcacactaATGCGACGAGACAGTGTAtacgactctttgtactttcGTCCTAACTTCcaggctttttgtagctggatatatcatttgtttcgcctaaatataaatgtggataacgttagtgatattgagatgcttgctacagttgcatttctagtgatgaatcggcgaaaacacgtttttattctctgattcacggctttgtcctaggtgctctctctcttcagtcactctctagctcaCTCGACCGTACACACCGTGCTTGCAGACGCTCGTTGAGACTCCGTCTATCTGCCATTTTGACCAGTAAACACTTtgtaacatagaaataaaatggattatggataattttatttctataattTGTAGCTGACCTTACCAGATGACTttgctattggctgttgaaacaggagacgtctcttacgttctaacACCAGCCTCTTGAGACTcaaccagctgagtcgcagccacaccatcagctggtttgagtcaAGCTGAGAAGGAccggttcagaccgctgcaacTTTTTTTGTCTGCGACGTTCTATAACGGTTTCTTCTCgtcgcgaatctttggtctgaactggggcTTTAATCCTGTCTTTTGAgatacattcatattttttttacacaatccATAGTCATACTGTACCCTGCTTTACCTCGTCATAACAACATAAACACGGCAGTCTCATCACCTGCATCATCACATTTAAAGCACACAAACCACAGTTTTACCGAAACCGTTCAGCTCGGCTCATTCCAGCATTGCATACTGGATGCATGAGTCCAACCTTCACTATAAGGATCCTTGGTCATGTTGCAATGCCTAATGCAGTAACTGCTCATGTCCACCACTGATCACAGCTCAGTATCAGCACACTGTACCCACGCCCAAACCTATCAACCGGACAGTCTTTCTGCTCTAAACAGCTGCCGTGGTAACATTTTCCTCAGCAGTGTTGGGGGTGGCCGCTGTGCCTGTCGGGGTCCCGTTGGCTGGTGTGTGTGGGGTGACTTTCGCCAGTCGGTGCTCCTTGCTGTGGGTGCAGCAGAGCTGGAAGGAGGCGCAGGCCGAGTTGCAGCAGGGTAAAAAGCGACAGACGCTGACCCGCCACAGGAACCAACCGGGTGACCAGCAGCACCAGCAGAGCACCACACCGCCTGCTACCACACCCAGGATGATGTAGAGAACCAACAGGGACAGGGAGGCGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59098 lncRNA upstream 89675 36286037 ~ 36287296 (+) True G44067
TU59073 lncRNA upstream 165998 36210677 ~ 36210973 (+) True G44044
TU59060 lncRNA upstream 203405 36170653 ~ 36173566 (+) False G44036
TU59059 lncRNA upstream 203405 36171483 ~ 36173566 (+) True G44036
TU59054 lncRNA upstream 219154 36157554 ~ 36157817 (+) True G44032
TU59211 lncRNA downstream 203059 36582527 ~ 36582888 (+) True G44159
TU59205 lncRNA downstream 298824 36678292 ~ 36679296 (+) True G44153
TU59236 lncRNA downstream 325999 36705467 ~ 36711130 (+) False fezf2
TU59290 lncRNA downstream 922756 37302224 ~ 37302516 (+) True G44232
TU59308 lncRNA downstream 1371599 37751067 ~ 37751312 (+) True G44247
XM_039796420.1 mRNA upstream 8561 36366520 ~ 36368410 (+) True LOC120556721
XM_039796899.1 mRNA upstream 49039 36301946 ~ 36327932 (+) True camk1ga
XM_039797093.1 mRNA upstream 127485 36243657 ~ 36249486 (+) True LOC120557073
XM_039797095.1 mRNA upstream 127485 36245061 ~ 36249486 (+) False LOC120557073
XM_039797092.1 mRNA upstream 134105 36216085 ~ 36242866 (+) True atxn7l2a
XM_039796735.1 mRNA downstream 51937 36431405 ~ 36676255 (+) True cadpsa
XM_039796736.1 mRNA downstream 52250 36431718 ~ 36676255 (+) False cadpsa
XM_039796738.1 mRNA downstream 52250 36431718 ~ 36676255 (+) False cadpsa
XM_039796739.1 mRNA downstream 52250 36431718 ~ 36676255 (+) False cadpsa
XM_039799130.1 mRNA downstream 323787 36703255 ~ 36711295 (+) True fezf2
unassigned_transcript_220 other upstream 414361 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 710930 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 890736 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 936832 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 1709789 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 1786714 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 2233169 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 2521104 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 2573650 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 3434492 39813960 ~ 39821908 (+) False G44581

Expression Profile