RNA id: TU59211



Basic Information


Item Value
RNA id TU59211
length 362
lncRNA type intronic
GC content 0.34
exon number 1
gene id G44159
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36582527 ~ 36582888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAATTAGCCATGCTCACATGGGACTTTCTTgttacatacatacagtcaAATTATGATGTCGAAAGCATTATTGTAcatgacattaaaaaaagaaaaagaaacattttcacTAAGCTTTTAGAAAAACTGATGACATTACAATTCATGACACTTACTGTCTCTGGTTTGCTGCTCTGGGATTGATTGCTATAAGcaatggtggaatgtaactaagtacatttactcaagtactgtacttaagtacaaatgttgaggtacctgtactttacttgagtcttttcttttcatgccactttgtacttctactccgctacatttcagagagaaatattgtactttttactccactacattcatctgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59123 lncRNA upstream 203059 36376971 ~ 36379468 (+) True G44092
TU59098 lncRNA upstream 295231 36286037 ~ 36287296 (+) True G44067
TU59073 lncRNA upstream 371554 36210677 ~ 36210973 (+) True G44044
TU59060 lncRNA upstream 408961 36170653 ~ 36173566 (+) False G44036
TU59059 lncRNA upstream 408961 36171483 ~ 36173566 (+) True G44036
TU59205 lncRNA downstream 95404 36678292 ~ 36679296 (+) True G44153
TU59236 lncRNA downstream 122579 36705467 ~ 36711130 (+) False fezf2
TU59290 lncRNA downstream 719336 37302224 ~ 37302516 (+) True G44232
TU59308 lncRNA downstream 1168179 37751067 ~ 37751312 (+) True G44247
XR_005638909.1 lncRNA downstream 1181889 37764777 ~ 37832619 (+) True LOC120556894
XM_039796420.1 mRNA upstream 214117 36366520 ~ 36368410 (+) True LOC120556721
XM_039796899.1 mRNA upstream 254595 36301946 ~ 36327932 (+) True camk1ga
XM_039797093.1 mRNA upstream 333041 36243657 ~ 36249486 (+) True LOC120557073
XM_039797095.1 mRNA upstream 333041 36245061 ~ 36249486 (+) False LOC120557073
XM_039797092.1 mRNA upstream 339661 36216085 ~ 36242866 (+) True atxn7l2a
XM_039799130.1 mRNA downstream 120367 36703255 ~ 36711295 (+) True fezf2
XM_039799117.1 mRNA downstream 729174 37312062 ~ 37735317 (+) True fhit
XM_039799181.1 mRNA downstream 1368752 37951640 ~ 37956976 (+) True LOC120558220
XM_039796336.1 mRNA downstream 1377818 37960706 ~ 38096026 (+) True plekha6
XM_039796337.1 mRNA downstream 1380878 37963766 ~ 38096026 (+) False plekha6
unassigned_transcript_220 other upstream 619917 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 916486 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 1096292 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 1142388 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 1915345 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 1583294 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 2029749 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 2317684 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 2370230 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 3231072 39813960 ~ 39821908 (+) False G44581

Expression Profile