RNA id: TU59236


Basic Information

Item Value
RNA id TU59236
length 1174
lncRNA type sense_over
GC content 0.47
exon number 2
gene id fezf2
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 36703255 ~ 36711295 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAAGCCTCATAAATGTAACCAGTGTGGGAAGGCGTTCAACAGAAGCTCCACGCTCAACACGCACGTGCGGATCCACGCCGGGTACAAGCCTTTCGTCTGTGAGTTCTGCGGGAAAGGTTTCCACCAGAAAGGAAACTACAAGAACCACAAGCTGACGCACAGCGGCGAGAAGCAGTACAAGTGCTCGATCTGCAACAAGGCCTTCCACCAGGTGTACAACCTCACCTtccacatgcacacgcacaacGACAAGAAGCCCTTCACCTGCGCCACCTGCGGCAAGGGCTTCTGCCGCAACTTTGACCTGAAGAAACACATCCGGAAGCTGCACGACAGCGTCTTCTCGCCAGCCACAAACGCCTCCAGAGAGCCGCAGAGCTGAGGCACGCTGCCCCATTTCCCCAAAATGCATTTCAATAATATTCCGACTGGGATTGTTggccctcaaaaaaaaaaaaaaaaaaaaaaaaagactggctTATAGCTCTGCATTTGTGGCCACGTTGAACAGTTGTGTTTCGAAAGGCCGGAGAGAAGGTGCATGGGGTAGTCCAATACAATTGGAAATAATCCCTTTAAAAAGAAGTGTGGTAATCCTGTAGGGTTTCAGATCCTGCCCAGGTGTCCCAGCAGGGACGCTGTAAAGGGAATACAGAACAGACCGGAGCACCTCTTATTACCACCGGTCTCCCATTAGGGCTGCTCAATTATGGAAAacatcataatcacgattattttttgGTCAGTTCTGAAATCGCGATTATtgaacacgattactcattgactttctGAAAGGTGTTGCGTTTTTTGAAGTGCAGAAACAGTGACTCAGTTAAACCAAtgaacagtgaaaacaccttgaaccgTGACATTTCCCCACGTTCAGAACACAAGAccaaataagagtttacttgcaaaacgtaatgtgctaAATAATCATTTTTCTGGATTACTCTATTTTTTTTGTGACCGTTAGGAGCCAAAATTGTAATCGCGATTAAAATGTTCAGTTCATTGCGCAGCCCTAGCTCCCGTACTGTGCGTCGGGATGTCATAGGGATTGGTTTCTGCACATTGACTGAACTTCTTCCTGCGTTGCCCGTTACGAGCATCAAACATGGGAGAAATAACCTGTCTCCACGATGGACCTGTAAATAATAGCTTATGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59205 lncRNA upstream 26171 36678292 ~ 36679296 (+) True G44153
TU59211 lncRNA upstream 122579 36582527 ~ 36582888 (+) True G44159
TU59123 lncRNA upstream 325999 36376971 ~ 36379468 (+) True G44092
TU59098 lncRNA upstream 418171 36286037 ~ 36287296 (+) True G44067
TU59073 lncRNA upstream 494494 36210677 ~ 36210973 (+) True G44044
TU59290 lncRNA downstream 591094 37302224 ~ 37302516 (+) True G44232
TU59308 lncRNA downstream 1039937 37751067 ~ 37751312 (+) True G44247
XR_005638909.1 lncRNA downstream 1053647 37764777 ~ 37832619 (+) True LOC120556894
TU59326 lncRNA downstream 1238385 37949515 ~ 37949777 (+) True G44265
TU59333 lncRNA downstream 1371511 38082641 ~ 38096072 (+) False plekha6
XM_039796735.1 mRNA upstream 29212 36431405 ~ 36676255 (+) True cadpsa
XM_039796736.1 mRNA upstream 29212 36431718 ~ 36676255 (+) False cadpsa
XM_039796738.1 mRNA upstream 29212 36431718 ~ 36676255 (+) False cadpsa
XM_039796739.1 mRNA upstream 29212 36431718 ~ 36676255 (+) False cadpsa
XM_039796420.1 mRNA upstream 337057 36366520 ~ 36368410 (+) True LOC120556721
XM_039799117.1 mRNA downstream 600932 37312062 ~ 37735317 (+) True fhit
XM_039799181.1 mRNA downstream 1240510 37951640 ~ 37956976 (+) True LOC120558220
XM_039796336.1 mRNA downstream 1249576 37960706 ~ 38096026 (+) True plekha6
XM_039796337.1 mRNA downstream 1252636 37963766 ~ 38096026 (+) False plekha6
XM_039796328.1 mRNA downstream 1299494 38010624 ~ 38096026 (+) False plekha6
unassigned_transcript_220 other upstream 742857 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 1039426 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 1219232 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 1265328 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 2038285 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 1455052 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 1901507 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 2189442 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 2241988 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 3102830 39813960 ~ 39821908 (+) False G44581

Expression Profile