RNA id: TU59333


Basic Information

Item Value
RNA id TU59333
length 1392
lncRNA type sense_over
GC content 0.36
exon number 2
gene id plekha6
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 37960706 ~ 38096072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTATCTAGTCCATGACCAAGAGACCTAAAGAGCAGGGGATTCTGTgtttgttgctctgattggttgtaggtctatccaattgcatCCAGACATTTTGGTCTACGTGATTAATTGGAACCTTgggaaatgaaaaatgaacaaaGGGGTCCAGAGTAATTTGCATTTGCGATTAGGTGTGGCGTCAGGCAAAAAAACCATTGATGTTCATTAATGAAcgcccgttacattcaagccactgccaaatgagttgatacaaagctaattaaggctatcagcgtggaggaggggtggggatgGTGCgttatcatgtggacgcgccgacagttttgttgtcgttacttagaattcctcatgggggagacagaaaacacacacacaccttctcttTGTAATGTGTGTTGTTTATGCTTTTTGGCCCATACACACTTCAATGTTCAAGTGACTTGCCTTTGTAGAAAGCTATTGTATGTCCATTCTCAGAGACAATATGGCACagattaattaagaaaataGAAAGTTACGCTGAAAGCAGTTAACGGCTCTCACTACGCAAAAACAAGGATTTAAGAGAATATGTCTATTTTTTTctcgttttaatttttttttagaaagggAATACGTTCAAAAAGAGGAAGTGGGTATATTTTTAGATGCATGGATATTCAATGACAAGTTGACAGGTTAAATTTGTACACTCAAttctgttttgcatttttcacacacaaaaagtacttttttatttcattgctCTTGAGGATTGTTTAAGGGAGCACAACATAGATATTTTTGGATTATAATTGGAATCCGATGTCTTGAGAAATGACAGCCAATGACAGGTAGTGTCCAATATTTGATACTAGATGTAGCATTTGTggatgatgaaaataaataatatatacattatatacattgGTCTGTGTACATAATATTTTGGATTTCAGTTACAGTATATCCTACTATCACATGTAACCATTgctattttttggggggttggAATAGACAAACTGCTTGAACTATGCAAATGATTCAAAAAAATAGACAAATAATACGCTTGCTTTCAGAAAACCTTGCAATAAAGTGAAtgtatacaaataatgtgtttctttagatGCTTCTGAATTCATCCCAGTATTTTGTATGATAAAACATGTCTCGCTGCCTGGAATGATGATCTATTTACTGCTCTCTCTAATTTTACTCCACTTGTTGATGATGAAGTTCACTGCCAAAAAGACTACTGAGGTTTACTGTCCAGCGGCCCATTACCAATAGGCCCCCTGATGATATTCTACAGTCATTATATCAAACTGTATGTCTGAATGAATAAAGTGCAAAAAACAACTAAGACAGACTGGATTCTTTCACAGCAAAGCTTTGAACAGGAACTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59326 lncRNA upstream 132864 37949515 ~ 37949777 (+) True G44265
XR_005638909.1 lncRNA upstream 250022 37764777 ~ 37832619 (+) True LOC120556894
TU59308 lncRNA upstream 331329 37751067 ~ 37751312 (+) True G44247
TU59290 lncRNA upstream 780125 37302224 ~ 37302516 (+) True G44232
TU59236 lncRNA upstream 1371511 36705467 ~ 36711130 (+) False fezf2
TU59401 lncRNA downstream 63865 38159937 ~ 38160694 (+) True G44325
TU59403 lncRNA downstream 77530 38173602 ~ 38174107 (+) False LOC120557027
XR_005638935.1 lncRNA downstream 131507 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA downstream 131510 38227582 ~ 38228350 (+) False LOC120557056
XR_005638933.1 lncRNA downstream 151231 38247303 ~ 38248320 (+) True LOC120557055
XM_039799181.1 mRNA upstream 125665 37951640 ~ 37956976 (+) True LOC120558220
XM_039799117.1 mRNA upstream 347324 37312062 ~ 37735317 (+) True fhit
XM_039799130.1 mRNA upstream 1371346 36703255 ~ 36711295 (+) True fezf2
XM_039796736.1 mRNA upstream 1406386 36431718 ~ 36676255 (+) False cadpsa
XM_039796515.1 mRNA downstream 1226 38097298 ~ 38103946 (+) True golt1a
XM_039797056.1 mRNA downstream 45521 38141593 ~ 38142268 (+) True LOC120557040
XM_039797067.1 mRNA downstream 50668 38146740 ~ 38147062 (+) True LOC120557051
XM_039797055.1 mRNA downstream 53899 38149971 ~ 38150381 (+) True LOC120557039
XM_039797040.1 mRNA downstream 70110 38166182 ~ 38174494 (+) True LOC120557027
unassigned_transcript_220 other upstream 2120031 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2416600 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2596406 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2642502 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 3415459 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 70110 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 516565 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 804500 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 857046 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1717888 39813960 ~ 39821908 (+) False G44581

Expression Profile