RNA id: XM_039796333.1


Basic Information

Item Value
RNA id XM_039796333.1
length 8741
RNA type mRNA
GC content 0.48
exon number 26
gene id plekha6
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 37960706 ~ 38096072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGTGTATCTGTCCCGCTGCTCTCCACCTCTCTGTTCATCTCTCCATCGCTCCTCCATCTGTCCGTCCGCCGGTCCCGTCTCCTGCACTGTCGGTACATGACGGATCCAGGGGAGGATGTTGAAGTTCCGTGTGGACAGGAGAGTCAGTCAACATGACCCCAGTAGACCAGCTGGACCAGCAGTGAGCCAGATCCAGCTGGAAGAGCCTGCAACCATACACTCCTATCTGCAGCACTGTGATTTGGATATGAATGGGAAGGTGAATACTAATGCTGAGAAGATCACTCACTCCAAAAGTGCAAATATGGTGTCAGACCTGTCCCCAGAAGGCCAGCCTTACACCCGGACGTCTCGTACTCCCAGAGGTACTCCCAGAACGGCAGCCACGTTTGGGAAGCGCTCCAACTCCATGCGCAGGAATCCCAAAGCAGCAGTCAGCAAACAGGGATGGCTGTACAAGCAGGCCAGCAGTGGAGTGAAGCAGTGGAACAAGAGGTGGTTCGTCCTGGCCGACAGATGTCTCTTCTACTACAAAGACGAGAAGGAGGACACGGTGTTAGGGAGTTTGCCGCTGCTTAGTTTCCGAATTGGAGGAGTGGAACCTTCGGATAACATCACCCGCAAGTTTGCCTTTAAGGTGAATTCGGAGAAGGAGGAGGGTGAGGACGGCGAGTTACAGGAACCTGTTGTGTTTTGCATGCAGGCAGAGCACGCGGGCACCAGGACGTACTACTTCAGCGCAGACAGCCATGAGGAACAGGAAGGCTGGATCAGAGCTATGAGCGAGGCTGCAGAGGTCATCATCCAGCCAACACATAGAATAAACGCAGACGCCACAGTTGATCTCAACCACACCATGGTGACCAAGGCCCCCAACCCACAGACCCCGCAGcatccacacacacaagcacacaatgAAACGGACAATGACTTCCCCCCCTACCCTAAAATCAACGGGGTGAACAGCCTCGAGACCCCACCGCCCTCCACCCCCTGCTCCGACCAGGAGGGCACAAAGAACTACGGCAGACGAGGAGAAGGCGGCGGAGACGGCGAAGACGAAGGCGGAGGACCTGGTCCTGACCACGCCCCGCACCCGAGTCAACATCCAAACGGTTGGGGCACTCGCAACGCCGCGCCCCACAACAGCCAGAGCCATGCCCCTCTCTCCAGGAGTCACAGCGGACACCGCACCCCTCAGGGACACCCGGAGGGGGGTGTCGGCCCGACGCGGGACCCCAGGGAGCAGCAGGACAATGTGGTGCTGAGGAGGGGCTTTGTGCCGCGGACGGCTCCAGAGAGGGTGGCCCAGAGGAAGAGCTCCATGGCCCAGCTGCAGCAGTGGGTTAACCAGCGGCGGGGCATGGCCTCACAGGAGGACCTCAACAGTCCCTCTCGTTACTACCCAGTGAACCGGGGGGTCCCGGGTGACTACTACGGCTACCCTGGTGGCCCCCAGTACGTGGAGGAGTACGCCCTGTACCCGCCGGGGGTCCGACCCGACAGCATCTGCTCCGTCTCTACCGTGGGGGGCTACGACCGGCGCTGGACTGTGGAGGAGAAGCGCCACTCGCTGAGGGACGGACCCCATCAGCTGTACGGACCCACGGTGCCCAGGGAGCAGTGGAGGCCGCAGGGCTATGGCGGAATGGAAACAGCCATGAGACGTCTGTCCATCCAGCCGCGCTCCAGGTCCGTGCCCAGGTCTCCGTCCTCGTCATCCTACTCGCCCAACTTTGCCTCACCGGCCCGGTCGCCGTCTGCCCGCTTCGACCGCTTTCAAAGGGGGATGAGGGACGACGTGATCTATGCTGATCCCTCCGTCTACAGCCTGCGGAGATCCCTCAGCTCGCCCAAGTATGACTACCCTGGTGATAGGAGGTCCTTAAGCCAAGGATTATACCACTACAACTACCCTGTATCCCCTTCCATCCACAATAAAATGGAGGACATATTAGATCTACAGCTGCAGCGCAACCTGGATTACTTAGACCAACAGGTGCCTCCCTTCCATGATGTCTACAGCAGAGAGTTACATCCTACACTGAAGCTCAACGAGATTGAAACCAGCAAACTCTTGGGTCGCCTGTGTGAGCAGAGCCAGATTCTGAAAGATCACGAGGCTGTTGTCCACCGACTGAGAATGGACAAGGACAGCCTAGAGGAGGCGCTGGTGGCGACTCATCAGGAGATGGAGCTGTACCATAACCAGCCGTTGGCCATGGAAAAGCTGCGCTTCAAAAAGGAAACCTTGCAGAACCAGCTCATCAACATCAGAGGGGAGCTCTCCCAGGCCTCCAGTGCTTTAACCACCACTCGTATGGAGTTTGAAGCATTGGAGGATGAGGCCAACGCCATTCATGGAGATCTATGGGAGCAGCTTAATGCAGGAGGGCAGAGTGAACTGGTCCGTAGGCACATCCAGAAAGAGTTTTGGAGAGTCCAGGATGTATTAGAGGGACTGCACAAGAATAACTCATCCAGAGGCACTGACACAGCCAAGCACAGAGTGGCCAGTGGTGCTTCAGGCTCCTTTAGCACCAATAGTCCAGCCAGTCCCCTGAGCTCAGTAAGCCTCACCAGCCCGCTCAGCCCCTTCTCCCCAGTGCCCGGCTCCCAGGCCTCCCCCACCAAACAGCTGGGCCCGGAGGAAAGTGTTCCCCCAAGACCTCCCCTCCCCAAGTCCTATTACCCTTTGGAGCCCTCCCCTAccttccctccctccgtccctcccCTGCCCTTTGACAGCGCCACCTGGCTACGCAGCTTGGGCATCGATGACGGTTACCTTGATGGTGAAGATTCTCACATCAGAAAGCCCAAATTTGGAGAACACAACAACAGCAGTGACGTGCAGGACCAGGTACAGGACAGACAATCCACCATGAATAAAGTTGGCATTGTCCCTCCTAGAACGAAGTCCCCCACCGACGAATCGCACAGCAGCTCTGCTAGAGTTTCCCGCCATAATGGCAGAGGGCCTAATGGAATCTCTAGGGAGCGGCCGAAGAGTGCTGTGTTTCCCGCGGAGCTGAAGTCGAAGATGAGCGTGCAGGAGCAGAATGAGCGAATCCGACGCAACcagagcagctctgtgaggGACAAGAGGCGGAGTCTAAACCTCTCAGGTGGCCAGTCTCCATCCAACTACAAAGTGatcCGTAGGCGGCTGACAGCTCACGAGATTGACATCAAAGACCTGGAGGCGGCGGTTCGAGGCCCGGGGCAGGAGTCACCTCGGCAAGAGATCGCTCGCCTGAGACGGTTAAAGGCTGAACCAGAACCCTACGACCTGGACCTCAGCAGAGAGGTGCATTTGTTCCAGCTGATGACTCCGGACAAGGTTCTGATACCAGAGCGCTACCTGGACGTGGAGGACAACACTCCTCTCAGCCCCGAGGAACAGAAGGAGAAGCAAAAAAAACTGGAGCGGATCAAGACTCTCATTGCCAAATCAAACCTGCAGAACATGGTTCCTGTGCTGGACGGCCCTGTGGATGGTGGGGCTCCAGTCAGCTCCCAGCAGCAGTTGGAGGAGCAGGAGAAGCGTATTGAGATCTCCTGTGCTCTGGCTGCCGAGGCCTCTCGTCGCAGCCGCCTTCTCTCGGCCCAGTGCGCCCCCAGCACCCCCACCTCCCCGACCAGCCTGGCCCCTTCCCCTTCCTCTGCTGACTTCCCCAACTCTGCCCACACCATGATGGCGTGAGTCATGCAAGCTCAAGCCCTGGCTGCTGTCAAGTTTGATGGAGCATCTTTCTGAGGATTCACCGGACAAACTACAACAAAAGCACGGAAAGCTGTCAGAGGAGGTTCCTAGGAGGCAAGAGCCAATTTCAAAACCCAATTGGAAGCTATACAGACTTGTTTaacgccccccccccaaaaaaaacaaaacaaaaaaaacctccaGTTCCATCCAACGGTCTCCTGCTATGTGTGCTCTATGGCACCAAGGAAGGCTCCAGATCTCCTACCAGCTTCAAGGTGTGAAATATTTCTCTATAATTTTGCTCAGGACATATTCCACAAAGAAGAGATTACAGATGAACTACAGTACGTTGATGATGAGATATTTTACACGCATAAAGACAAAATGTTCAATGTTGATCAGTTCACAAGGGAACACTACATATGAGATGCCCACACTGAAGAGGAACTGGGGACAGAGCTGCAGAGATAAATCAAGAGAAAGAGTTTGGGATGGGGCCAGATGGACATCACTGAGGTTGACTGGTAGACAAAAGCCTCACTAAAACCTACAGAGAGGCTTTGAACATGCTTCTGGACACTAAAAGCCACAATGATGTTTATACTGTAATCATCTAATCTTCATATCAATCTTGGAAAACCACCATGGCTTGTGGCCCAGTGAGGAGTGGTGCTCAGTGACAGACAGACTGTTAACAACTGAGCGAAATAAGAGTCAAGCCTCTCATCCTTtgtataaagaaataaaagctgaGGACTCCCCTTCTGAACTCACTGTGATGCCTGTCTCACCACCAGACCTCCACCCCCTTCCACTTCTCCCATCCCATCAACATGGTCTGGTATTAACTACACTCATATGCAACCATTAGCATGACATACATTTGATTGGGTCAAACGTAATATCACCTGGCTTAAATTTTGCTTCAATGCATCGCCCATCTTTCACACCAAACACGCAAAAGCCAACCCCTTCTCACTTCCAACTCTTCACATGCTTTCCTTAGaggcttggtcagtggcccTAAGCTTCAGATAGCGACGCACCAGGCACCCTTGTATAGGACGCACTTGGCAGAGCAGCAAAAAGGACGCCAAAGGGGTATCCAGAGTGTTAAAAGGTGACACCAGGGGTCCTGACTAAGCttcagtatttgacgagttgggattGGGAGTGTGTTGAAAGAGCACAGAGTTTGTTGCAAGGCAGAGCTGAAGATAAGGAGTTTTACATCAACCATGACCCATCTTACAAAGCTGCTCATGGCAACACCTTGTCCTACGTTCGATTCAGTGTTGCAGACGTGAAACACAATATTCATTTTCTGACCTGGTATCCTCACCCCCTTTACTGACTTACTTGTAAGATCTAGAGTAAAGCCCCTGATATACTCCAAAATGAACAGCTCTGTACATACCACACTGGGTGTACGCAGATGTGGTCCAGCCGACATGCTTGTAGGCATATATAAAGTCTGCGTGGTCATACATTATAAACCGCAGTCTGTGTGAATCATGCCAGACATGTTACCTTGcatggcagctggattctcgcggTAGCATGAGATCACGCAAAATCGCATgatcacatatcacacaaaATGTCCGGCTTCAAGTTAACGTATTTGTGTCTGGACATCTACTGGAAGCTACGGGCGTGGTTTTGAGTGTGAGTGGCGATTGCGACCGTTTGTTCAAAACAAAGATGGCGGACATGATAGACAGATAGTTCATCCAGTCACCTGccagggctttttttttaaggtgcctgcccttttccaaacagtttccaatggcTGCttagatggttctgtgtaaaaGACCATCTGTGCAGTTGATGAAATGTATGTCCCACGGATACATTCTTTTCTACATTGAAAGAGGCATCTCACAGCCTCTGCCTGCTGTCAATGCTGCGATGCCATTGGTTAAAGTCATCTTATTTGGGGGTGAAAATTCAATTCAGTTGAAATTTTGCCACAAAATGTGGAGGAAAATCAAGGCAGTGTGCACAGCTAGGACTCGCTCTGCTGCTTGCTCTTTGTCATGTTGACTTTACTATGATGTGAAAGCCGTTCAAATTGTAAAGTTGAAATTGTTATTTTAGTTGAATTATGGCCATTTTGTCTCATCTGTATGGTGGAGTGTTGTTAGACACTAAGACAGACACATTTACTGCGGTTGGACTCGCTGTCTGTATGGTTCTGTCCAGAGAGAAGTGTTCAAACCAGAGCTGTGAGACACCAAGTGACATGCTTTCCCCTAATGTTGTGGGCCAAACATTTTAATACGGAGAATAACACCAGCAGTGGATTATATACTTAGGTATATAATGTGTATTTCAACTTTTGCAATGGCTGCTTCATAGAAACAGCAGGCTGTGACACAATATTCTGCCCTAGATGGAAAGAAGCATCTGCCTGAGGCAACAACAAAGTCTGAAAGGGAGAGTCAGTTACTGCTCAAAGACGAGGGGGAATATGAGTCCGGAAGCCTTTTCCTGATAGAACATTTTTACACCTCTCCGTTTTCTAACCCCTCTCACCTTTAGACAAAAACGGTGGTCATCTGGAGGTTAGACAGGGAAAACGTCAGACTACTTGAAGGAAATTGGATAGATAGGTACCAGGGACTCTTGTGTTGAAGGCAAATTCTTACAGAGCCATCCACCTGCCTGATCTCCACACCATCGCTCTATATGAGCCTCACATTTCTGAATTCTGTTTTGGCACAGAATTTTGGCATTGAGCAACAATCTCTAACCCTGAGCAGATGCATATGAATGTGATCCTGAAGGGGTACCATCACCTCACCATCAACCTCTGTGTGCAGCTCTCACATTTTTGTTAAATCcctttgcattttaccatcgCATTCATTCAGACTTCGTCATAGTGCTCAAGAAATTCCCATGTGATTGTCTACAGATATATAGGTAAAGTATGTTGGATAGAAATGGTACAGTGCATGTGCAAAGTGAAGATAGAAGTGACCTTAGAAGAGTATAACTCTGGGAGAAAAGCACTTGTCTGTGTGGAGAGGAGTTAATGGTGCATTTGAGAGGAATTATatagtggaaaaaaaatatgtaacatATCCCAAAAACATTTCATCCTGTCATGCAGTGCCATACATCTGAaacatgtctgtgttttgtctgttgtgATGAAAGAACATATTAATGACATGATTTACAAAGGAGGTTGAATCTGGAGGAAATGATTGGTGGTACCAATGGGGGTTGCCAAGGTTAGAAATGTCTACCCATCATGGCCaacattaaataattaaataatacattttgaaataaatgcatTGTTTAACTTTGAATGAAGTCAATAACACATTGATTTCATTTGGAATAAGCCAACATGCATAAATGAACCACAtattgtgaaataactgaaagaaATATTACAGCTCAACTCGTTATTATGCAACTCTGTCTCATAAAAAAATGGCATTCCAATTGAACTACactgcattctcaattatgTTTTCGAGGGAAATGTATTTTCTCCTGGATTACGGTTGTTTCAACACGTCCTCGTACCAGCGATAGGCGCAGGTTGTGAAACAGTCAACAGGTTTAGGAAAAGTttatggtttgggttcaaataatatatatatatatatatataataaaccagagcaaaccctcctccgcagcgctgtggaggaaagtctggctaTGCGAGACTAGGTTGACACATCCATCCACCCCAACCTCATCCCTGCATGGACTTTGAGCGCGGACTGTGATGCGGACTGTGATTAGGAACGTATTTGTGATGTGTTGAAAACAAATGTAATCTTGGACAAAATACATTTCCCTCAAATGCAATTGAGAATGTATGGGAACATCATTTCCGGTATTTTAGAACAGTGTGACTGAAGCTTTTTTCGTGACAGAAAGGtccaaaacactgaaaaaactGCTATCTATAATGTTATTACTTTCTAAATTTGGCCATGCCTCTTCATTGCAACTTCCTCCAGATGTGAACGCCttgacgacacacacacacacacacacacacacacacacacacacacacacacaccttctcttTGTAATGTGTGTTGTTTATGCTTTTTGGCCCATACACACTTCAATGTTCAAGTGACTTGCCTTTGTAGAAAGCTATTGTATGTCCATTCTCAGAGACAATATGGCACagattaattaagaaaataGAAAGTTACGCTGAAAGCAGTTAACGGCTCTCACTACGCAAAAACAAGGATTTAAGAGAATATGTCTATTTTTTTctcgttttaatttttttttagaaagggAATACGTTCAAAAAGAGGAAGTGGGTATATTTTTAGATGCATGGATATTCAATGACAAGTTGACAGGTTAAATTTGTACACTCAAttctgttttgcatttttcacacacaaaaagtacttttttatttcattgctCTTGAGGATTGTTTAAGGGAGCACAACATAGATATTTTTGGATTATAATTGGAATCCGATGTCTTGAGAAATGACAGCCAATGACAGGTAGTGTCCAATATTTGATACTAGATGTAGCATTTGTggatgatgaaaataaataatatatacattatatacattgGTCTGTGTACATAATATTTTGGATTTCAGTTACAGTATATCCTACTATCACATGTAACCATTgctattttttggggggttggAATAGACAAACTGCTTGAACTATGCAAATGATTCAAAAAAATAGACAAATAATACGCTTGCTTTCAGAAAACCTTGCAATAAAGTGAAtgtatacaaataatgtgtttctttagatGCTTCTGAATTCATCCCAGTATTTTGTATGATAAAACATGTCTCGCTGCCTGGAATGATGATCTATTTACTGCTCTCTCTAATTTTACTCCACTTGTTGATGATGAAGTTCACTGCCAAAAAGACTACTGAGGTTTACTGTCCAGCGGCCCATTACCAATAGGCCCCCTGATGATATTCTACAGTCATTATATCAAACTGTATGTCTGAATGAATAAAGTGCAAAAAACAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59326 lncRNA upstream 60848 37949515 ~ 37949777 (+) True G44265
XR_005638909.1 lncRNA upstream 178006 37764777 ~ 37832619 (+) True LOC120556894
TU59308 lncRNA upstream 259313 37751067 ~ 37751312 (+) True G44247
TU59290 lncRNA upstream 708109 37302224 ~ 37302516 (+) True G44232
TU59236 lncRNA upstream 1299495 36705467 ~ 36711130 (+) False fezf2
TU59401 lncRNA downstream 63911 38159937 ~ 38160694 (+) True G44325
TU59403 lncRNA downstream 77576 38173602 ~ 38174107 (+) False LOC120557027
XR_005638935.1 lncRNA downstream 131553 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA downstream 131556 38227582 ~ 38228350 (+) False LOC120557056
XR_005638933.1 lncRNA downstream 151277 38247303 ~ 38248320 (+) True LOC120557055
XM_039799181.1 mRNA upstream 53649 37951640 ~ 37956976 (+) True LOC120558220
XM_039799117.1 mRNA upstream 275308 37312062 ~ 37735317 (+) True fhit
XM_039799130.1 mRNA upstream 1299330 36703255 ~ 36711295 (+) True fezf2
XM_039796738.1 mRNA upstream 1334370 36431718 ~ 36676255 (+) False cadpsa
XM_039796515.1 mRNA downstream 1272 38097298 ~ 38103946 (+) True golt1a
XM_039797056.1 mRNA downstream 45567 38141593 ~ 38142268 (+) True LOC120557040
XM_039797067.1 mRNA downstream 50714 38146740 ~ 38147062 (+) True LOC120557051
XM_039797055.1 mRNA downstream 53945 38149971 ~ 38150381 (+) True LOC120557039
XM_039797040.1 mRNA downstream 70156 38166182 ~ 38174494 (+) True LOC120557027
unassigned_transcript_220 other upstream 2048015 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2344584 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2524390 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2570486 35439977 ~ 35440139 (+) True LOC120558245
TU58591 other upstream 3343443 34665236 ~ 34667182 (+) False G43656
TU59402 other downstream 70156 38166182 ~ 38167218 (+) False LOC120557027
TU59524 other downstream 516611 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 804546 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 857092 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1717934 39813960 ~ 39821908 (+) False G44581

Expression Profile