RNA id: TCONS_00007167


Basic Information

Item Value
RNA id TCONS_00007167
length 1625
RNA type mRNA
GC content 0.53
exon number 9
gene id XLOC_003701
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42585138 ~ 42599018 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGATCCGTCTCATATTATCTGTGTCAGTGCGATGGATGTGGACGTGGACACATCCGGAGGGATTTCAGACGAGGATGTGGCCATGCAGATGATGATTGAACAGAGTCTCCAGCAGAGCCACAAACCAACACAGTTGAAGAGCTACAGCGGAGACGCCTGCAGGATTGTTCAGATTTCGCCTGAGAGAGAGAAGATTTTCAATGCAATAAAATACGGTGATGAATTCTCTCTGCGTAAACTGACGGTCCACCAACGCTGTTTCTCTGAGGAAGACTCTACAGGCTTCATCCCTTTACACGACGCCGCCATTCAGAGCAACCCGAACATTCTGCAGATCACCTTCAACGCGTCTCCTGAAGACGCGAAGCACAGAAAGACTCGTCGTGGGAAAACGGCGCTCTTCTTAGCAGTAGAGAACGGGCTTCTGGACAATACTTTCTTCCTGCTGGATCACGGCTGCAGTCCAGACACGCTGGATAAAGAGGAGGACTCGCCTCTCATTGTAGCCATCAGAAACAATCAGCTTGAGATGGTGGATCTGCTGCTGAGGTTTGGAGCGCGTGTGAATCAGGAGTGTGTGAACCGCAGGACAGCTCTCCATGAGGCTGCCCGACTGGGTCTGACGGAGATTCTGGATCTGCTGATGAAGAACGGAGCTCACGCTGATCCTCGCAGCTCTTTCGGCCTCACACCGCTGGCTTTAGCAGCACAGGCCGGATACCTGGACATCATGAGGACACTAATACACAGAGGTGCTGATGTGGAGTCTCAGGCTCAGGATTGCGCAACCATCTTGTTTGAGGCTTGCATTTCAGGAAACCCTGACGTGATTTCATTACTGCTGAAGTCCGGCGCAGACGCAAACGTCCCCAAACACACGGGACACCTGCCCATCCACAGAGTAGCTCACCGCGGACACCTCAAGGCCCTCGCTCTCCTGATCCCCGTCACATCGTGGGATGCAGTGGACGACAGCGGCATCAGTCCTCTTCATTCAGCCGCCGCCGGTGGACACACACACTGTCTGGAGATGCTCCTCAATGCCGGATACGACCCAAATTTCATGCTCCACCCATGGGTCCGGCGCAGCTACGATGATAAGCGTCAGTCGGCACTGTATTTCGCCGTTTCAAACGATGATGTCTCCTCTGCAAGAGTCCTTCTAGAGGCCGGAGCCATGCCCAACCAGGACCCGGTCAAATGTCTGCAGGTGGCGCTGCGTCTGGGTAACCACGAGCTGATTCAGCTACTGCTGCGATACGGTGCCAATGTAAATTATTTCTGCCGGGTGAACACCACACACTTCCCCTCGGCGCTGCAGTACGCGCTGAAGGATGAGCTGGTGCTGCGGATGCTGTGTAATTTTGGCTATGATGTGGAGCGATGCTTCGACTGTCCGTATGGAGAAGGGTCGCATGTGCCATGCGGATATGAGGGCTGGACTGATACCGTCATCAAAGACACTCTGTTTTGTGAGGTGATTTCGGTCTCCTTTTTGAAGCATCTCTCGGGGAGTGTCGTGCGCATCATGATGGATTACGTGGATCATGTGAAATTCTGCTCCAAATTGAAGGCTGTGCTCATGGAGCAAAGACAGTGGGCTGAGATCTGCCACTTTCAAG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-2 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB14 (ankyrin repeat and SOCS box containing 14).

Ensembl:

ensembl_id ENSDART00000019008

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007166 lncRNA upstream 12156 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 166764 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 453231 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 486847 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008426 lncRNA upstream 515474 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008429 lncRNA downstream 197530 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00008687 lncRNA downstream 243802 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 243806 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008689 lncRNA downstream 243808 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008690 lncRNA downstream 243818 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00007165 mRNA upstream 23923 42556395 ~ 42561215 (+) True XLOC_003699
TCONS_00007164 mRNA upstream 82198 42494531 ~ 42502940 (+) True XLOC_003698
TCONS_00007163 mRNA upstream 92478 42482920 ~ 42492660 (+) True XLOC_003697
TCONS_00007162 mRNA upstream 103321 42478184 ~ 42481817 (+) True XLOC_003696
TCONS_00007161 mRNA upstream 107366 42474716 ~ 42477772 (+) True XLOC_003695
TCONS_00007170 mRNA downstream 4683 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007169 mRNA downstream 4683 42600731 ~ 42635440 (+) False XLOC_003702
TCONS_00007171 mRNA downstream 4811 42600859 ~ 42627847 (+) False XLOC_003702
TCONS_00007173 mRNA downstream 37328 42633376 ~ 42634720 (+) True XLOC_003702
TCONS_00007174 mRNA downstream 45356 42641404 ~ 42722658 (+) False XLOC_003704
TCONS_00007149 other upstream 1119902 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1427210 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1427212 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1695844 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 1929267 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007172 other downstream 29323 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 448778 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1428714 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1728713 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1728713 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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