RNA id: TU59489


Basic Information

Item Value
RNA id TU59489
length 1853
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G44402
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38410002 ~ 38412477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCAGGTCCCGATATGAGCCAAACTAGTCTGTTGAACGACTGGCAGAACGGACCAAGCTGCATTTgaatatgtaataatatgttTATCTCATGCTGGAGTTTTACTTCTCTTATAATGCAGGAAACTGCATTCATGTTTGAAAGGGGATTTAACGAGATGGAAACTTGACTTTGTTTGACCTCCGGTGTCCTTAGTTTTTAATTTGAGTTTTTATTTCAATGTCCAgcatctttgtttttttcctccctcaGTAAGCTAAAATAAAAAGACCTGGGGGCGACAGATTTATGGAATCGGTTcaacaaagcttttatttcctGGATTTATTAGTTTTGATTTGGCACGGAACAAGATttgcccccaaaaaaagaaaagtggcaGGGAGCCGACGACTGAATCTGGCGTCGACCCAGGTCTGATTCACCTTCGCTCGGAGCAACTCAGCCGCTCATTTTTATACACgcagcacaaaaaaacatttctatttttctatttttacatAGGTTCAGTGGTTACACGGTCCGATAGGAGACAGTTTCTCAGGTCATAAAACTCCTCAGGGGTGTGAAATAACGACAGTAGTGGGTAGTGAAGACAAATGACTGTAGATATTAAATTTGGAAATCCTTCACACAAAGAGTCcgtgtgtatgtatatgagCACAACTGCCTGCATTTGTATATTGTGATTTAATTTTGAACAGTTGAAGGGTTTTGTACACAAAACGAAACCATTTTTCATTAAGTTTTATTGAAATATCAAGCCGATATCAACAAGTTAAAGCGTGATTTTGGTATtttggaccctattttccccaTGCATAAGTGTCTTAGTGACTAATATGGACAAACATCTTTATcagaaattggtccagtattgagagagagaacgctgtaaccagcagccacAAACTGGAATGTTTTCCTACAGGGCAAATGTACATTGTCAGTTAACGTTCTTTTAAAAGTTCAGTTTTGGCTaccgacaggctcagattattattctaagtgtctgacaacattatggcaaggttccctacagagatagacctttttgctAAAGAGTGTGGCTtttgccaaacccaccagactccatgtaaataatcactacttttagcgtgtatagagcagcatatttccacatgtaaaagGGTGAATTAaggtgtttatttcaaccaaaccagactGGTGACTGTTGGAACGGTGGAACGGTggtttctgtcaactttgaatgatttgatgttttacgatgataaaatgaaatggagtctggtgggtttggcgatagcgattttggggctgtttcatatttaacaaaaagaatcttactctttaacaacaaggtctatctctgtagggatcctttccataatggaatggttgtcagacacttagaataataatctgagtctgtcagcggcaaaacaagctctTTCAATGGACGGAAATTGAAGGTGCGCAGTTGCCCATTAATTTTActttgcagcttgtttcttgcttaatactggatcAATTTCATTGATTTTTGTTCCCATTAGTCAAGAAAACAtggggaaaatagggtccaggtggAAAAATACTAATAAGTTACCCTTTTAAAACTAGTGTCGGATGACTTTTTGGGGAGAAACCCTTCAGCTGGACTTAAAGtccagacaaacaaacaaacaaaatatttcaacctttttagactttttttgtgtgcaggacTCTCATGGTTCTCTGTAAGATAATGACTCgtattcatttttcattttctcttctgtgttacaagcaaaacaaaaagggatttttctttctgcctcattttaaatgttctgctgctttctttcTGAACAGTgacctaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59473 lncRNA upstream 78575 38331380 ~ 38332050 (+) True G44387
XR_005638933.1 lncRNA upstream 162305 38247303 ~ 38248320 (+) True LOC120557055
XR_005638935.1 lncRNA upstream 182275 38227579 ~ 38228350 (+) True LOC120557056
XR_005638934.1 lncRNA upstream 182275 38227582 ~ 38228350 (+) False LOC120557056
TU59403 lncRNA upstream 236518 38173602 ~ 38174107 (+) False LOC120557027
TU59487 lncRNA downstream 350 38412827 ~ 38413939 (+) True G44401
TU59504 lncRNA downstream 43445 38455922 ~ 38456336 (+) True G44417
TU59506 lncRNA downstream 44204 38456681 ~ 38457162 (+) True G44419
TU59511 lncRNA downstream 94591 38507068 ~ 38507690 (+) True G44424
TU59518 lncRNA downstream 109130 38521607 ~ 38522632 (+) True G44430
XM_039798178.1 mRNA upstream 1351 38366059 ~ 38409274 (+) True LOC120557646
XM_039797053.1 mRNA upstream 63382 38346807 ~ 38347243 (+) True LOC120557037
XM_039797043.1 mRNA upstream 66374 38342443 ~ 38344251 (+) True LOC120557028
XM_039797054.1 mRNA upstream 84635 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 98138 38311854 ~ 38312487 (+) True LOC120557035
XM_039798639.1 mRNA downstream 321690 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA downstream 321714 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA downstream 334154 38746631 ~ 38784058 (+) True rbpjl
XM_039798642.1 mRNA downstream 343656 38756133 ~ 38784058 (+) False rbpjl
XM_039798209.1 mRNA downstream 444690 38857167 ~ 38886428 (+) True LOC120557663
TU59402 other upstream 243407 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2448015 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2744584 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2924390 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 2970486 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 200160 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 488095 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 540641 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1401483 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1743731 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile