RNA id: TU59504


Basic Information

Item Value
RNA id TU59504
length 415
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G44417
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38455922 ~ 38456336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagggtccaaggtaggtgctggagtagatcctggaaggtcagatacaggggatagggatttgtaaatgagattgattttgtcagtgaaaaagtggaggaatgagttgcagagatccggagtagaggtaaggaggctgttggtccgaggcttgatgaggttgttcaatgtggagaagagggttctggggttttggcaggggtcggtgaggatggtggagaggtaggcagatttggcagcaatgagggcatctttgtaggcgatgagatgggatttataggcttcatgatggactgtgagggatgatttctttgtcagacgttcaagttggcggccagtttgtttcattttccggagtgcaggtgtgtaccagggtgaagaggtgttaaaagtgacgagttttgttttgagggggg

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59487 lncRNA upstream 41983 38412827 ~ 38413939 (+) True G44401
TU59488 lncRNA upstream 43445 38410002 ~ 38412477 (+) True G44402
TU59489 lncRNA upstream 43445 38410625 ~ 38412477 (+) False G44402
TU59473 lncRNA upstream 123872 38331380 ~ 38332050 (+) True G44387
XR_005638933.1 lncRNA upstream 207602 38247303 ~ 38248320 (+) True LOC120557055
TU59506 lncRNA downstream 345 38456681 ~ 38457162 (+) True G44419
TU59511 lncRNA downstream 50732 38507068 ~ 38507690 (+) True G44424
TU59518 lncRNA downstream 65271 38521607 ~ 38522632 (+) True G44430
TU59522 lncRNA downstream 115561 38571897 ~ 38572141 (+) True G44434
TU59526 lncRNA downstream 164219 38620555 ~ 38621027 (+) True G44438
XM_039798178.1 mRNA upstream 46648 38366059 ~ 38409274 (+) True LOC120557646
XM_039797053.1 mRNA upstream 108679 38346807 ~ 38347243 (+) True LOC120557037
XM_039797043.1 mRNA upstream 111671 38342443 ~ 38344251 (+) True LOC120557028
XM_039797054.1 mRNA upstream 129932 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 143435 38311854 ~ 38312487 (+) True LOC120557035
XM_039798639.1 mRNA downstream 277831 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA downstream 277855 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA downstream 290295 38746631 ~ 38784058 (+) True rbpjl
XM_039798642.1 mRNA downstream 299797 38756133 ~ 38784058 (+) False rbpjl
XM_039798209.1 mRNA downstream 400831 38857167 ~ 38886428 (+) True LOC120557663
TU59402 other upstream 288704 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2493312 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 2789881 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 2969687 35463772 ~ 35486235 (+) True LOC120556915
XR_005639074.1 other upstream 3015783 35439977 ~ 35440139 (+) True LOC120558245
TU59524 other downstream 156301 38612637 ~ 38612971 (+) True G44436
XR_005638991.1 other downstream 444236 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 496782 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1357624 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1699872 40156208 ~ 40163610 (+) False LOC120557666

Expression Profile