RNA id: TU59542


Basic Information

Item Value
RNA id TU59542
length 2164
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G44454
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38709982 ~ 38713823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAAGTTCTTTTATTGCCTTCTGTGCTGTAATACATCATccgaaaaaatacaaaaaggtaataatatacaaaaacataCAGGCATTCAAATATAAAGGGGTATACATTTGTGGTGGTCTTTTGTTTTTATACAAAACtacaagagagagacagacaatcTACCAAAGTTATGTTGGTCATTAATTTACATACAGTGCCCTGTGAAGCCTCTCATTCTCCGTTAGTCTGAAGTAACTAGATAATGTCAGACTGGTCAGGCATTGCTGATGATGTAAAGGACCACTTTAGGGCAAAGATAgacaaaataatgtaatgtgAACCACTTTTTTTGGTATTAATAATACTCAGACATGTTTAGGGCACTGTAAAACAACATCTAGAAAGTGCAGAGTAGAGAACCAATTTGATTAACAAATGTGAGACCATATTTATTTTGAGTAAAATACTGGTTCCTGTCATATCTGGTTCATCACATTTTCTCTGTCAACAACAGACCACAGCTTTAGTGAACAGTGATACTTGAAACTTCTTAGCTTCCCTTTTAGTTTTGAATCTAAACCACTTTCCTCTTCATCAGTCCTCAGACCTGTGATCAAAACTAGTTTAGACGGGGAAACAAGTAATGATTTGGTATGAACATGACAATTTAATATTGGGAGTGGTAACAACACTTCATTTTATAAAATCTCTTTTCTCTAAATTGCTATTCTACTGTGGTAGAAAAGCAAACAATCTGCTATAAATACATCACATTTAACAAACCGTACAAAACAGATCAAGTATAAAAGGCACTAACGAAAAATGTGTGGCGACGAATGAATACTGAGCGTGATGAAAACTTGTGTTTTCACTATTATTATTTGTTGTGCTTGTGTCTAATATCTACACTACATTGATTACATCTAGTTTACAAAGACAGCCAACATGCCTGCAAtcccctttgtgtgtgtgactgtttaTCCTTTATGTAGGTACACACAAATCCCAAAAGTTAAAGGGTAAATTTGGTATtattcaacctggaccctattgacttatgtttttgtgtctaagtgactgatgggaacaacgaTCTTTATCATCGCAAAAcgcacttcattcaaagtcaacagaaacaaaataaaactatcaaatgCCGTCTTGGTTCGTCCTTTCTACTGTTCCAACAGTCACCACTCTGGATTGATTGAAACTAAACCCTTAATTTACCTATTTACATGTATACATGTGTTGGCTCTGTACAGGCTAAAAGtattgattatttaaatgaagtctggtgagtttggcaATAAGGATTTCTAGGCTGTTTCTGCTTAATCAAAAAGGatcttattttttaacaaaaaggtccatctctgtagggatcctctgcataatgttgtcagacacttggaataataatctgagcctgtcggtggcaaaaacagaacttttagatGACTGAAATTGCCGATTCACATTTGCTCTACGTATTTGATTACATTCCAGTTGTGGCTGCCGGTTTACAGCGTTCTTGCTCAATAccggaccaatttcaaagatgttTGTTCACATCAGTCATGTAGACAGCAATGCATTGGTAAAATAGGATCCATGTTGGAAAATACCAAAATAACTCTTTAACAGATGTCCTGGGGAAACTTAGAAATGTAATCTGTTTTATGAAGGCATTTGTTTACAGTTGTTTTGCCCAGTGATGGGTGGGAAAGTGGATGTagtgtttgttgtattttgtattctTTTAAACAAAGTGTACAAATTAGGTAATTTACATTGATACCAGAAATATGATTCTATATCACAAGCTTTCAGATACGTGTCATCCTCATAAAGGTGAAGAGCAACAAGCCGACTGAAGGCTACAAAGGCTTTGTGAAAAGACACTTTGGTTTTGTCCATTGATTGAAAAGGTTTCTGATGtgccctcctcttcctcactctgttattctttctttttccctgtGGCGTCCCGTCCGCTCACTGCGATGAAGATCACTTCCTCACTTCCTGGAGAGAAGCTGGTTCTCCAGCTGCTCCAGACGAGCAGTCATCCCAGATAgTTTCTGTGTGAGCTGCTCCAGGCTGCTCATGGTGGCCTGCTGGAACTCCACCAGACTCTCGCAGGCACACGGGTCCTTCACCTCGATCTCCCCCTGACTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59539 lncRNA upstream 26521 38683161 ~ 38683461 (+) True G44451
TU59537 lncRNA upstream 26891 38682795 ~ 38683091 (+) True G44449
TU59526 lncRNA upstream 88955 38620555 ~ 38621027 (+) True G44438
TU59522 lncRNA upstream 137841 38571897 ~ 38572141 (+) True G44434
TU59518 lncRNA upstream 187350 38521607 ~ 38522632 (+) True G44430
XR_005638998.1 lncRNA downstream 92623 38806446 ~ 38813444 (+) True LOC120557691
TU59576 lncRNA downstream 92646 38806469 ~ 38812630 (+) False LOC120557691
TU59588 lncRNA downstream 110852 38824675 ~ 38825019 (+) True G44488
TU59589 lncRNA downstream 127211 38841034 ~ 38841233 (+) True G44489
TU59600 lncRNA downstream 274245 38988068 ~ 38988533 (+) True G44499
XM_039798178.1 mRNA upstream 300708 38366059 ~ 38409274 (+) True LOC120557646
XM_039797053.1 mRNA upstream 362739 38346807 ~ 38347243 (+) True LOC120557037
XM_039797043.1 mRNA upstream 365731 38342443 ~ 38344251 (+) True LOC120557028
XM_039797054.1 mRNA upstream 383992 38325543 ~ 38325990 (+) True LOC120557038
XM_039797051.1 mRNA upstream 397495 38311854 ~ 38312487 (+) True LOC120557035
XM_039798639.1 mRNA downstream 20344 38734167 ~ 38784058 (+) False rbpjl
XM_039798640.1 mRNA downstream 20368 38734191 ~ 38784058 (+) False rbpjl
XM_039798641.1 mRNA downstream 32808 38746631 ~ 38784058 (+) True rbpjl
XM_039798642.1 mRNA downstream 42310 38756133 ~ 38784058 (+) False rbpjl
XM_039798209.1 mRNA downstream 143344 38857167 ~ 38886428 (+) True LOC120557663
TU59524 other upstream 97011 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 542764 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 2747372 35962539 ~ 35962610 (+) True trnac-gca_18
TU58929 other upstream 3043941 35664143 ~ 35666041 (+) True G43924
unassigned_transcript_205 other upstream 3223747 35463772 ~ 35486235 (+) True LOC120556915
XR_005638991.1 other downstream 186749 38900572 ~ 38903056 (+) True LOC120557667
XR_005638992.1 other downstream 239295 38953118 ~ 38981733 (+) True LOC120557670
TU59701 other downstream 1100137 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 1442385 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 1766853 40480676 ~ 40506570 (+) True G44690

Expression Profile