RNA id: TU59633


Basic Information

Item Value
RNA id TU59633
length 616
lncRNA type read_through
GC content 0.37
exon number 2
gene id G44527
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39499099 ~ 39865513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCATCTTTTATTTAGATAGAAATGATGAAGAGCTGCCTGAAATTACATGATGCCCTGAGAGTGCATCAgataaaacatactgtacatacacaattCTGATATCACAGCCAACAACAGTGTCTAGTTCAACCTGACAAACTCTGGCTTAGCACCTTAAGACATAAAAAGAAGCAGAACATGATTGTCCTAAGCAATGTCAATTACACAAatatccaaataaaaaaataagtcacATTAGATTTTACTTTGACTacaaaaaaattcacatttcttttaCAGTGTGACATCAGGCTCTGGTCTTAAATGTTCTGTTTTCTAATGCCCATCACATCTAGCTCAGTTAGGACTTTTAACAACTACAAGcagcagaataatattaataaagcaGTTTATATatcattcatccattcacacCCCGATGACAGTGAGCTACCATACAAGGAGCTGTCTGACCATCGGGAgtaatttggggttcagtgtcttgctcaaggacacttggaCGAGTGGACAAGAAGAGCCGGGGATCAAACCACCGACCCTGCCAGCAGGTATATCAACATTATCTTTTAAAGGagacatattatgctcattttcaggttcttaCTTGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639001.1 lncRNA upstream 293881 39203669 ~ 39205218 (+) True LOC120557694
XR_005639003.1 lncRNA upstream 398603 39099985 ~ 39100496 (+) True LOC120557696
TU59600 lncRNA upstream 510566 38988068 ~ 38988533 (+) True G44499
TU59589 lncRNA upstream 657866 38841034 ~ 38841233 (+) True G44489
TU59588 lncRNA upstream 674080 38824675 ~ 38825019 (+) True G44488
TU59711 lncRNA downstream 33056 39898569 ~ 39900323 (+) True G44590
TU59718 lncRNA downstream 94863 39960376 ~ 40275840 (+) True G44595
TU59779 lncRNA downstream 299971 40165484 ~ 40166527 (+) False G44645
TU59780 lncRNA downstream 299971 40165484 ~ 40167629 (+) True G44645
TU59781 lncRNA downstream 299971 40165484 ~ 40166010 (+) False G44645
XM_039797151.1 mRNA upstream 185417 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 222120 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 356749 39122788 ~ 39142350 (+) True LOC120557683
XM_039798217.1 mRNA upstream 518986 38953118 ~ 38980113 (+) False LOC120557670
XM_039798216.1 mRNA upstream 518987 38953118 ~ 38980112 (+) False LOC120557670
XM_039798212.1 mRNA downstream 290706 40156219 ~ 40431341 (+) True LOC120557666
XM_039798224.1 mRNA downstream 654429 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 689437 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 779675 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 801339 40666852 ~ 40668742 (+) True LOC120557687
XR_005638992.1 other upstream 517366 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 596043 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 886128 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1331881 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 3536489 35962539 ~ 35962610 (+) True trnac-gca_18
TU59760 other downstream 290695 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 615163 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 638839 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 654429 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 800686 40666199 ~ 40667506 (+) False LOC120557687

Expression Profile