RNA id: XR_005638997.1


Basic Information

Item Value
RNA id XR_005638997.1
length 642
lncRNA type inter_gene
GC content 0.50
exon number 6
gene id LOC120557690
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39644755 ~ 39646601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTATTCAAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCATGAGGGAAAGCAATGCACGAGCAGCTTCGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATCAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTAGCTGAAAGGAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCTGACCCCTTAAACCTAGGCTGACTACTGACACCCCCTTATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639000.1 lncRNA upstream 34551 39608721 ~ 39610204 (+) True LOC120557693
XR_005639001.1 lncRNA upstream 439537 39203669 ~ 39205218 (+) True LOC120557694
XR_005639003.1 lncRNA upstream 544259 39099985 ~ 39100496 (+) True LOC120557696
TU59600 lncRNA upstream 656222 38988068 ~ 38988533 (+) True G44499
TU59589 lncRNA upstream 803522 38841034 ~ 38841233 (+) True G44489
TU59657 lncRNA downstream 6683 39653278 ~ 39653916 (+) False LOC120557689
XR_005638995.1 lncRNA downstream 6726 39653321 ~ 39655738 (+) True LOC120557689
XR_005639002.1 lncRNA downstream 94392 39740987 ~ 39743350 (+) True LOC120557695
TU59691 lncRNA downstream 100590 39747185 ~ 39753186 (+) False LOC120557680
TU59677 lncRNA downstream 128018 39774613 ~ 40227520 (+) True G44562
XM_039797151.1 mRNA upstream 331073 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 367776 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 502405 39122788 ~ 39142350 (+) True LOC120557683
XM_039798217.1 mRNA upstream 664642 38953118 ~ 38980113 (+) False LOC120557670
XM_039798233.1 mRNA downstream 100578 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA downstream 100578 39747173 ~ 39774250 (+) False LOC120557680
XM_039797157.1 mRNA downstream 144416 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA downstream 509624 40156219 ~ 40431341 (+) True LOC120557666
XM_039798224.1 mRNA downstream 873347 40519942 ~ 40541231 (+) False LOC120557674
XR_005638992.1 other upstream 663022 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 741699 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1031784 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1477537 38166182 ~ 38167218 (+) False LOC120557027
unassigned_transcript_220 other upstream 3682145 35962539 ~ 35962610 (+) True trnac-gca_18
TU59701 other downstream 167365 39813960 ~ 39821908 (+) False G44581
TU59760 other downstream 509613 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 834081 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 857757 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 873347 40519942 ~ 40541231 (+) False LOC120557674

Expression Profile