RNA id: TU59705



Basic Information


Item Value
RNA id TU59705
length 707
lncRNA type intronic
GC content 0.44
exon number 2
gene id G44585
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 39845181 ~ 39847645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCAGCTGTTGGTTGGAAttgaggggccatccacacggaaacgcttgttttgcatcgtttgggccgatcATCCAAATGAGTCCTGTAAACGCACGGCCTGAAGatgcacttttttgaaacctggtcccagggtgaaaaaataaaaaaatgccgGCCTTGCGTCTTCGTTTGGACGGTGAagcctcttatcccgcgacgacgtctcataacaacaacaacaacaacaacaacaatggcggactacatgcttgtgttcctgctggagaagatattaggctcgttggagatgagccaGACGTGATTCCAGAGCGAGTCAGgaggcagagacacagaagaggaagaagtTCCATCGCTGTCGATGTCTCCTAAAGATAAAGCATCACTTTAACATCACAACGTCTCTAATAACGGAGATGGAGCCAATCCTACTTGGTACTGATGTAACAACAGCACCACTTCCTGCACAGatccttcagaataaaagcgtCATCCTCACAGAACCAAGACGACTCAGGAATTCTGCACAAAAGCTGCTCATAAtgtgtgcaaactgcaaaaagCTCTTTATCTTCACACTGACTATAATATTGTTATTAAATAAAAACCTCAGAGCCTCAAATTAAGCCTTAAATTCACTGCACAGTTTCAACTTTACTGTTGCACGAAATGTCTTCATCTCCTGACCACTTTATCAGCAGAAGTAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59700 lncRNA upstream 27683 39816607 ~ 39817498 (+) True G44581
TU59691 lncRNA upstream 91995 39747185 ~ 39753186 (+) False LOC120557680
XR_005639002.1 lncRNA upstream 101831 39740987 ~ 39743350 (+) True LOC120557695
XR_005638995.1 lncRNA upstream 189443 39653321 ~ 39655738 (+) True LOC120557689
TU59657 lncRNA upstream 191265 39653278 ~ 39653916 (+) False LOC120557689
TU59711 lncRNA downstream 50924 39898569 ~ 39900323 (+) True G44590
TU59718 lncRNA downstream 112731 39960376 ~ 40275840 (+) True G44595
TU59779 lncRNA downstream 317839 40165484 ~ 40166527 (+) False G44645
TU59780 lncRNA downstream 317839 40165484 ~ 40167629 (+) True G44645
TU59781 lncRNA downstream 317839 40165484 ~ 40166010 (+) False G44645
XM_039798233.1 mRNA upstream 70931 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 70931 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 531499 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 568202 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 702831 39122788 ~ 39142350 (+) True LOC120557683
XM_039798212.1 mRNA downstream 308574 40156219 ~ 40431341 (+) True LOC120557666
XM_039798224.1 mRNA downstream 672297 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 707305 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 797543 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 819207 40666852 ~ 40668742 (+) True LOC120557687
TU59701 other upstream 23273 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 863448 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 942125 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1232210 38612637 ~ 38612971 (+) True G44436
TU59402 other upstream 1677963 38166182 ~ 38167218 (+) False LOC120557027
TU59760 other downstream 308563 40156208 ~ 40163610 (+) False LOC120557666
TU59833 other downstream 633031 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 656707 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 672297 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 818554 40666199 ~ 40667506 (+) False LOC120557687

Expression Profile