RNA id: TU59749


Basic Information

Item Value
RNA id TU59749
length 4516
lncRNA type read_through
GC content 0.38
exon number 3
gene id G44621
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40412611 ~ 40545375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccaaacttttggcctgtactgtataaaaatgtatactGCATGAGAAAAACTGCATGGCATTATTATCAAATGGGAGTGTCTGTAAAGGAGAGACCTGTCGGTCCCCATAGaacccattttcattcagacatcttgaggtcagaggtcaagggatccctttgaaaatggccatgccagtttttcccCTCGCCGAAATGTAACCTAACTTTGGAGCGTTATTTATCCACCTTCTCTACGAGCAGAGATggtaaaagtactcacttcccgtactcaagtagaagtacagatacttctgttaaaaaatactctggtaaaagtagaaatactgATTTAACCTCTTTAATCAAGTAAAAGTGAAAAGTACAGGCTtgaaaatttacttaaagtataaaagtaaaagtagtcttgcgaatgacaaccattttttacataaagctacctggaccacacaaatgttactgcagtgcaagctgagaaacgtaagtggacatggaaaaaaggctctttatatgccttTTCCTGCATTATAAATGTATGTCTGCCAATGGGCCTAAAACATCAAATATATGATAATTGTGAGATTAATAAGAttctgagtagcaagatatgaattcaaatgtgattctgtgagaattcacagatccagtttctatTTTTCaatcttccccttaacatttaaaggaatctacatgtatgtgtgtgtgctcaaatatggcttctggaaagaaaataaaggataaaatatgaattactaaacagacattaattaagaagttccccatacaaATAACAACCAGCAATAACAATAGCGGTAACTCCACTGAAATTAattgaaactaaagtaacgagccaattttgttaaatgtaaggagtagaaagtaccaatatttgtgttaaaaatgtaaggagtaaaagtaaaaagtcggcacaaaaataaatagtaaagtaaaaatatctgaaaaatctgcTTGTGTACAGTAACGAAATATTTGTACTTCGGTACTTCCCCTCTCTGCCTACGAGCTAGCATGATATGGTTGGTATTAAAGGACCATAAGTTGTCTGGTTTCATATGATACCAAGATCTTCACTCTAGCTTCAAATCTAAGCTTGTTACAGCAACTGAAAGACAAAAAGTTGTCTGGTTCCGTCAGCAGGCCATCAGAAACGTGAGGGGTTGTAAACTCTCCTGGGGGAGACAGTGAACCCTACGTCACTTCTGTCAGTCAGCCCAGCTCGTTGCATAGTAACTAGCTGCCATAGGTGTGTGAGGTGAATGTATAAAAGCAAAATATGAATAACCTCCATTTACCTTAACTTTCTGCTTACAGCTCTAAATAATTGTAAAGACAAAAAATACTTGTATATTATAAACTGCAACTTAAGGCATAGTAGAGGGGTCCTTAAACTATGTAAGCTATGTTTAAGGTTAGACATATTTTAGACAACATTTTCTGTGCTTTTATATTTGACAGAATTGTTGCTATGAAGAATTATTAAACTTTTTGAGAATGAATGCTCAAAAATGTCATTCctgatatttttttccatttggtAAATTATATATACAATTCAGCCAAAACCAACCCATAATTcactatgtgtgtttgtgtgcgtgtgtatatatatatacacggaacattttaaattaaacagcttattaacgtgcgcttgtttgcccgtgtgcgctgatgcgctcatctgttgacatttccgaatgccttcctacagttgcttaataaaagcgggatttccacacaaacaaacgtacatgtgtcattagtatgaggaacaaaaaagagattttaactgtgttaactgtgtcgggctcgggttgggatcggacataaatatcttaatgcctgtcaggCTTGGGCcaggttcggttactgctctgtcggttttgttcggacagaaaaatgcggcccgatccggactctagtgtgaatgaatgaatgagggaCATATAAACTGCTTTATAAATGTAATCCATTCACAAAAGATTATCCTGCTGCTTGTAGTTCCTTAAAGTACTGAGCTACACATGAtgggcattaaaaaaaacagaagacttCACAGAACTGAAGCCTGCTGGCAAGCTGTAAAAGAAAGTAAATTGCTTTTTTTAGACAATGTGAAATATAAtgtgacttatttttttttactttgatatTTGTGTCATATGATATGTTGTGAAATTATTTGTGACAAGCAGTGACGCCTGATgacaattatttttttgggggggtgcttttttttggtgggggggagggagggcaTATAAATACAAAGTAGTTCTTTGAAACTGGGCAAAACAACCAGCactactttatttaaaaaactatgtattttgtatttaagaAGAGCAAGACAATATGATACAATATTCAAGTTACAAACATAAGAAGATAGTGACTCtgactgagtttttttttaactatatcCTCCCACCCACTAACAAAAAGCATGTTAACTACTTGAACATACATTTTACTCTCCTTTCCTTCAGACATATCTGACAGTATTGGGGTCAAAGTCACGAGAGTCTTGTATTCTCTCAAAACAGCAAATGAGATCCTCTCTGTCCTAAAAAACAGTATTGATGACACGGATATGAAAGTTCCATCTGACGTTGCTGGATCTTGGCAGTCTATGGGCAACCACTTTATCCAGAAAACATGGACTTGGAAAAAAAGCTGGCAAATCCACcaatgttagaaaaaaaaattgagggATGAACTCAAAAAATCTTTCCTGTACATTGTTTTTGTCGGCTCTACAAAATGTCACACAGCCTATTATCCTGAACAGTATGTGTCGATTTTTTGTCACCTCTTCGTTGTGCCTTCTAATGCCCATCCTGTAGCCTTCATCTGGCTAGCTAGTTGTTCAGCAATGCTAACTCTGCCAACAAACGTTAGCTTCATGCTATTATCAAGATGTCTGCGACTACTTtcatgacattttcatttttcagagAGATGTTTTTTCTGACTCTTACCCCCGTTGTTCTACACAAAACCTCAGTGccgacactttgaaataaaaagacAGGGAAAGCAAAAAAAGGCATTGCTAACATCACATCCAGCCAGCCAACTCCGTTTGTAGCTCCGTTGTAGCTTCGCCCTCGGTCATTGGCCTCAGCCTGCTGCTGGATTTGTAAATCGGGTTGGTCCGCTCAGAAATCCTTTatcctcttcttttcttccagTGAACGTCTtgtaaaaggttttttttgtaaatcaatAACAGAATTTGGTTTGACTGCTGCCATTTACTCTACGAAAGTgatctgtcattgtgttatttCTAAGCTTGCAAGGTTTTGGCGGAGTGAGTAGCGTAAATTTGAATGACATGTGTCGaggaaccaatcagattggatAAAATAACATGTATCCAATTCTGATTCGCCAGGGATGCAGCAACCTGCGCCTGGAGGAGAATTTTTAAGAAACCAATTAGAGACCAGCTTCAGGTCACATGCTGGCCGAAAGTTTAAGGACTTAAGGCCCAGACACAGAGCCGACGTCAAAAACGGTAGTTAGGCTGATCAGTCTTCCCAAATTGGtcaaaaaaagtgcctcagaacacactaaagcgacgagacgtaatacgtctccataacagcaggcggtgctaatctgtattatcgccaataaaattaaaaccggtagctgattggacgaatgcgtcacgtgggtcttgtTTCTCCGGAAATTTAAAGCCAGactcatggcggcttgttcagaatacgatttcatattgtactaaaatagttcaccgaaacgtgtttctgaaaacattttaagcgagaaataggccatgcagttgctgaatctgtcttcatttcagatcaacaaaggtcagtttaaaagatttttgtcagattttgagagactctagtcacgctcattccgctccccgtttccgggttagcacatTTGAGTCCGTCTGCCGGCAGTGCCCaccccgccgattatacatgtcaaatcggtcaaaatgaaggaagacggcccctcggacggacgacggcacccATTTGGCCGGTGTTcctgccatggatgtattaagagaacggccCCTATCCATGAAACTGCAGGAAACATATTGAAACATAGAACATAGTTAACCGATTAAAGccagttttattattttttaattttatttcattttcatataatttctgtatacatttatatttctggaatttTGGTGGGGGCGGCGCCCCAACGCCATCTATTGACAAGCCGCCACTGGTGTCAAGCATCTTCTGCTTCTTTTCATTTCTGAAGGTGTTAAGCCAGAGTTTTTTCAGGTACAGTTACAAACTGAACTATATACATGtaggtttttatgttttatctgATGAGGGTATCATGTCATTTCAATCAGCGCTTCATCTTCTATGCAAATGtttgaataaaacatgaaatatgtCAAACTGCATGTTGTGACTGTTGTAGATGTTTCTGTGTTCAAACTttgataaaataaacaaactgcAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59750 lncRNA upstream 386 40412611 ~ 40431155 (+) False G44621
TU59822 lncRNA upstream 37835 40387566 ~ 40393706 (+) True G44680
TU59803 lncRNA upstream 119904 40305214 ~ 40311637 (+) True G44664
TU59799 lncRNA upstream 129734 40299296 ~ 40301807 (+) True G44660
TU59802 lncRNA upstream 132271 40298627 ~ 40299270 (+) True G44663
XR_005639006.1 lncRNA downstream 56053 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA downstream 57188 40602563 ~ 40603037 (+) True G44637
XR_005639007.1 lncRNA downstream 110484 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 153685 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 168306 40713681 ~ 40933867 (+) False G44711
XM_039798212.1 mRNA upstream 200 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 657291 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 657291 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 1117859 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 1154562 39249166 ~ 39276979 (+) True LOC120557665
XM_039797160.1 mRNA downstream 9575 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 99813 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 121477 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 139447 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 176321 40721696 ~ 40734477 (+) True LOC120557681
TU59760 other upstream 267931 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 609633 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1449808 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 1528485 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1818570 38612637 ~ 38612971 (+) True G44436
XR_005638994.1 other downstream 120824 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1205628 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1324355 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1351647 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1360154 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile