RNA id: TU59759


Basic Information

Item Value
RNA id TU59759
length 906
lncRNA type read_through
GC content 0.45
exon number 4
gene id LOC120557312
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40848815 ~ 40931383 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGAAGGTTCCTCAGAAAGATGATGATCTGAAGGAGGTGTTCCTGTATGATGCAGGCATTCATTACAACAACGGTCGTCCAGGTCAGAGTGAAGAGTTCAAAGGTCGAGTCTCTCATTTTAAAGATCAATTGAAACACGGCAACGCCTCCATAATCATCAGAAATACAAAGATATCTGACAGTGGAAACTACACCTGTTATTTTCCCCGTCTTCATCAAACATTCAACATTGAACTTGTTGTTGACCGATCAGGAGAAATCCAAGCCGCGACACCGAAGCCATCTGTAACAATCCTTGATGCCACAGCTGGCTGGGTCCTGCTGCAGTGTGAGGTTCATGGTGCTTCTCTAACATCTGGAGTGGAGTGGAAGGACAGTGCTGGAAACACACTTCCTGCTGAGGAGACACGGACCCCAGAGAGAGACCACTACTACATCACCCTCAACACTACTGTTACCAGGACCAGCCGTTACCGCTGTGTAGTAACACAGGAGGAAATCAGCCATCAGACTCACGCTGAGATCTTTGTGCCTATCAGTGGTTCTCGTCAGCAGGGAAACGGTCCATGCGAAAAGTGTTCAGAGATGCTACGTCCACAAAATGGTCGATGACTTTAAGTCTGTGTGTTTACTTGTACATCTGTCTTTGTGAGAATCAGTTTGAATTTTTGAATTTGTGTGTTTGAGGGTTCAGACCAGAGGCCCTTcctagtacaggcctcaggtacGGTGTTCATTTTAGGACATCCTCAGATCTCAGACTCAGgtgttaaactcaaacacaaCAGTCTTGACAATATACCAAGAAACTTTGGAGCAGATTGTCACATTTTATTGCTGTTCATATTTACCCTCAATTCACATTACTTTGGGAAACTGTATTGTTTGGATTCACTCAATATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59862 lncRNA upstream 54017 40729150 ~ 40794798 (+) True G44712
TU59766 lncRNA upstream 65003 40738910 ~ 40783812 (+) True G44632
TU59762 lncRNA upstream 73757 40716801 ~ 40775058 (+) True LOC120557697
XR_005639004.1 lncRNA upstream 74508 40773029 ~ 40774307 (+) False LOC120557697
XR_005639005.1 lncRNA upstream 76381 40759809 ~ 40772434 (+) True LOC120557698
TU59858 lncRNA downstream 1196 40932029 ~ 40938117 (+) False G44711
TU59767 lncRNA downstream 19088 40949921 ~ 41025342 (+) True G44633
TU59903 lncRNA downstream 115011 41045844 ~ 41077132 (+) True G44751
TU59904 lncRNA downstream 115011 41045844 ~ 41077132 (+) False G44751
TU59905 lncRNA downstream 115011 41045844 ~ 41077132 (+) False G44751
XM_039796295.1 mRNA upstream 27718 40807228 ~ 40821097 (+) True LOC120556655
XM_039798229.1 mRNA upstream 50766 40738891 ~ 40798049 (+) True LOC120557677
XM_039798230.1 mRNA upstream 60169 40738894 ~ 40788646 (+) False LOC120557677
XM_039798235.1 mRNA upstream 114338 40721696 ~ 40734477 (+) True LOC120557681
XM_039797514.1 mRNA downstream 30875 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA downstream 38387 40969220 ~ 40989919 (+) False LOC120557311
XM_039797163.1 mRNA downstream 427308 41358141 ~ 41360354 (+) True LOC120557130
XM_039796702.1 mRNA downstream 431670 41362503 ~ 41365014 (+) True LOC120556884
XM_039797165.1 mRNA downstream 475710 41406543 ~ 41412621 (+) True LOC120557132
XR_005638994.1 other upstream 181309 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 307584 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 342245 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 342759 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 685205 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 820170 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 938897 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 966189 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 974696 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 974774 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile