RNA id: XR_005639004.1


Basic Information

Item Value
RNA id XR_005639004.1
length 693
lncRNA type intronic
GC content 0.41
exon number 3
gene id LOC120557697
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40716801 ~ 40775058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCAACAGCTTGAAAAGCTCAACCAGATGACCGTAAAGGCCTGATGACAAAGATCACAGATAAATCTGCATGGAGGGAACTTCTCCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGACCGCTGTGAGGTCTCACACACTCAGCAAGGAAATTACTGGAATTATTTAGATAAAGACAGTCAATATagaatctgtgttttttttttaaataactacatTTTGTTTATGATCCTAAAGGAAACAAGACTGCGTCAGCATTGTCACTTAATTTTAAAGGGGACATATAATGAAAAACTCTCATTTTCAGTCATGGTGCACAAACATTTGAGTATCTGGAGGGCCGACCAACCCAAAACCTGAAATCAAACAACCCAGCCAGTTCTTTGTGGGCATCCTCAATCTGATGTAATTCAACAAGCCATTCAGATTCAGCTCCTCTTCCTATGTCACATGCAGGCTGATTAGAATATACTGTTCCTCATCtccaccatggatgtattataagatatTTCCATTTCGGCACCCTTTATCATCATGAGTGGCCGCGTCAGCCTCGTCAAGCCAGGAAGGTAATCATATACAGGAAGGCCACAGCACAGCCGCATACTTTACAAAATGGaacagatttcaaaataaaacacccaggtttatggtgattttggatgttttgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639005.1 lncRNA upstream 595 40759809 ~ 40772434 (+) True LOC120557698
TU59864 lncRNA upstream 17826 40737276 ~ 40755203 (+) True G44713
TU59754 lncRNA upstream 53814 40699060 ~ 40719215 (+) True G44622
XR_005639007.1 lncRNA upstream 116383 40655859 ~ 40656646 (+) True LOC120557700
XR_005639006.1 lncRNA upstream 163465 40601428 ~ 40609564 (+) True LOC120557699
TU59882 lncRNA downstream 53113 40827420 ~ 40867607 (+) True G44731
TU59759 lncRNA downstream 74508 40848815 ~ 40930833 (+) False LOC120557312
TU59858 lncRNA downstream 157722 40932029 ~ 40938117 (+) False G44711
TU59767 lncRNA downstream 175614 40949921 ~ 41025342 (+) True G44633
TU59903 lncRNA downstream 271537 41045844 ~ 41077132 (+) True G44751
XM_039798235.1 mRNA upstream 38552 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA upstream 38552 40721696 ~ 40734477 (+) False LOC120557681
XM_039798240.1 mRNA upstream 56908 40684822 ~ 40716121 (+) True LOC120557684
XM_039798243.1 mRNA upstream 104287 40666852 ~ 40668742 (+) True LOC120557687
XM_039798225.1 mRNA upstream 125515 40645188 ~ 40647514 (+) True LOC120557675
XM_039796295.1 mRNA downstream 32921 40807228 ~ 40821097 (+) True LOC120556655
XM_039797509.1 mRNA downstream 98542 40872849 ~ 40914254 (+) True LOC120557310
XM_039797511.1 mRNA downstream 98542 40872849 ~ 40914254 (+) False LOC120557310
XM_039797510.1 mRNA downstream 98542 40872849 ~ 40914254 (+) False LOC120557310
XM_039797512.1 mRNA downstream 98542 40872849 ~ 40907094 (+) False LOC120557310
XR_005638994.1 other upstream 105523 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 231798 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 266459 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 266973 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 609419 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 976696 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1095423 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1122715 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1131222 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 1131300 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile