RNA id: TU59764


Basic Information

Item Value
RNA id TU59764
length 3087
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120557674
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40519942 ~ 40547848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttttcttaatttgcttgtgttttgtctatttgcatgtgtttcctgaagttgcagggcatttgcccctgtcggccaccgtacacATGGGATCACACTAGACACAGGCAGATAAAAGAAGAGGGCACAACGCTCACCACATACCCGGATGACAGTCCAGGAGGCTAGAGTGACAGATGTCAGGTTAAAGTGACATGGTGCATAGGGATGCAGAGCGCAAATCCACAACCTTTACAATAAATAGATACAATAAAGCTAGTATGGGTGGCataaaaacatttagaaaagTATTATAAAAACAGTGAACAGAGAAGTGCAATTCATACAGGCTCATTAGGAGAACCTTTTTCCATGAGGTAGTGGTTCAGTGATGGAGAGCTGTTTAGAGATTTAATGGCTCTGCAGTATGTGCTGTTGAGAAAGTGGGAGGTTTTTGTCTTAATAGCTCTCAACCTTCTCCCTGATGGGAGGATGGTTAAAGGGAGTTGGCAGGGTGAGTCTCATCTTGTAGGATCTTTAGGCCTGTCCGGTGGATACGGGCCTTGTAGATCTCACAAATGGGGAAGAGTTTGCAGCCACTGATTTTTGAGGCCATATTGACTATCCTGTCCAGCTGCAACCTCTGCTGGACAGTGGAGTTGCCATAACAGACAGGAACAGTAAAAGTGAGGACCCTCTCGATGGCGGCTCGGTAGAACTGCAACATTCCCCCACAGGCTACCCCAAATTTCCTCAACtggcaaagaaaaaaagcctCTGGTGGGCTTTTTTGGTAACATTGGTTATGTTATCCTCCCATTTTAAAGAGGATGATATTGTTGTGCCTAAAAACGTAAAACtatccacccgctccaccaccTCTCCATTGATGTACAAGGGACTTTTACTCTTAAATTGTGGATGGAACACCATTCAATCAGCGATAGGACCTCATTTCTATAGGCAACATCATCATCCCCAGAAATCAGTCCCACCACTGTTGTATCATCtgcaaatttaaacattttaacagaATCTGTGTGTGATGTGCAGTCATTTGTGTACAGCGAATATAGAAGAGGTGATAAAACACACCCCTGAGGGGCACCAGTGTTAATGTGCTTGACATTAGAGATCTTGTTACTGATTTTGACCACTTGTGTTCTCTGCTATAGAAAATCCAGTGACATAAGGAATTATGGACCCCCATTTGTTGAAGTTTCTGAAAAGGTTTGCTGGGTAAAATTGTATTAAAAGGTGAAAGGTTCTGTAGAATGGAGTGGAGACATAGGGATACAGCATCCTCGACGGACCTGTTTGCCCTTTATGCAAATTAGAAGGTGTCTAGCCTGACCACACTGAACTGATGTTTACATACTATTCTctcaaagattttcattttaacaGATAACAGTGCTACAGGTCTGTAATCATTCAGGCAactaatgctgtttttttttgggcacAGGAATTAATACAGCAGAATGTCCATATCTGTTAGATTTAGGGGTGgcacggttcacaaaacccccggtttgtatcacggttttagggtcacggttttcggttctgtacggttcttgttattttttcttttaatctttaacactacagaaaaatacttcagcatatgatatttagcttaattatccacaatataggatacagtattaaaaaATAGTTATATCATGTAGtcatgcacaaactgaatttgacttgactttaagcacattattgggaccatctctgaggaaagctagctgagattttgatacagcGGAAGACATCGatgatttcaacaagcttttcatttatttggcaaaaaaagagaatgtgTATTGCCATCTTCAGGAACATGTGTGCCTTTTTAGCACACAAAGATTGAAATCttacagaatatcaattgaaataacttgcattcatcaaactgccaacttcagtgtagctcttacaaaaattgtatcctttaaaagaaaaagagaggaactcttaaagcgccgtcttttgaataagtcaaAATATgttaaacattgaaaaaaaaagttctttaaaaataaaaaggaaacttgttactttagagtgaaaaaacgttacagcgtacattgatgttgaaataaaatgtatacaggttggcaggacggtctgaaatgttttgtacGGTCTTTCGCGCACGTTATGTTGGTAACTTGTCCACACCTCTTCGCGTGAAAGGGAAACACACTGTCTGAGGTCACATACGGGAACCTGAAGGGCAAGAGGCTACATTGCGCATGCGTCGAACCGTGcaacacacacgctccgaaccgagacaagcggaccgaatggttcggatgtttttttttcatgaaccatACCACCCCTAGTTATATTAGACCTGTTTTTAATTTTAGCATCCTGTCAGTTTACATGCAGAAATCTTTTAATGAATGAAGCAGCAACAGCAGTAATTTCACACTTCTCTAATACAGCTGAACTACAAAAGTactgagagctgaacacagagCCTTTTAGAAACAGAGCTTTCTCTTAACTTGTCAAGGAAAGTTAAGAGGGAGTTATTATAGTCTaagcaggggcgtagcacaaaattctgggccctgtagaaaggcattttctatgggcccctccccgtatccacagctattcattccagcatctttttgggccctcctcacatgagggccttgggtactcagtcccccttttccccccagtccgacgcccctgagTCTAAGCATTAATGATCATCTTCCTTTATGTTTGAGACATAAGGGGTCAAAGGGTTCACGTGCTGGTCAAAAATTAGTTCCTGACTGAAAGTGACACTTTTGACCAAAAACTTCCAGGAACTTTGGAACCAAATTAATTCAATTAAGGAATTAAACTCAGGAACTGGAAGTCTGTAAATTCTTGTTTGAAACCTTGTGAAACACAGAATGATACatatcaaaacacaaaaaagcctGGGAGTGTAGCACACAGATAAAACCTGTAGAAGGGAAACTTGGTATAGATTGTATAGTCTGAATAGGATCAATACAGAAAAGATTTTCATCGGTTAGTGTTGTTTTCTGTCCTGCATAGAGTGCGGATCAAGCGCATTattgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638999.1 lncRNA upstream 31326 40504194 ~ 40505985 (+) True LOC120557692
TU59831 lncRNA upstream 42689 40472624 ~ 40494622 (+) True G44689
TU59769 lncRNA upstream 104726 40411768 ~ 40432585 (+) True G44635
TU59750 lncRNA upstream 106156 40412611 ~ 40431155 (+) False G44621
TU59822 lncRNA upstream 143605 40387566 ~ 40393706 (+) True G44680
XR_005639006.1 lncRNA downstream 53580 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA downstream 54715 40602563 ~ 40603037 (+) True G44637
XR_005639007.1 lncRNA downstream 108011 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 151212 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 165833 40713681 ~ 40933867 (+) False G44711
XM_039797157.1 mRNA upstream 90665 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 105970 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 763061 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 763061 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 1223629 39294637 ~ 39313682 (+) True LOC120557118
XM_039797160.1 mRNA downstream 7102 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 97340 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 119004 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 136974 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 173848 40721696 ~ 40734477 (+) True LOC120557681
TU59833 other upstream 30741 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 31255 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 373701 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 715403 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1555578 38953118 ~ 38981733 (+) True LOC120557670
XR_005638994.1 other downstream 118351 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1203155 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1321882 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1349174 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1357681 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU603193 True 1307 lncRNA 0.34 1 CI01000391 18159 ~ 19465 (-)