RNA id: TU59768


Basic Information

Item Value
RNA id TU59768
length 1480
lncRNA type read_through
GC content 0.39
exon number 5
gene id G44634
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40443873 ~ 40627311 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATCACAAGACCCAGGAAACCCACCTAGGGAACAGCTTGAAAAGCTCAACCAGATGACCGTAAAGGCCTGATGACAAAGATCACAGATAAATCTGCATGGAGGGAACTTCTCCAATCTCCGTGTCTTCGTGGACTCCTCGTCTGACAATTTCTTCTGTACTGAGGCCGCTGTGAGGTCTCACACACTCAGCAAGGAAATGACTTTACTTTCAGTTTCATAAATAGGACctataaatttaattaaataagtaAGAGTGAAAACCACCCCACCTGCAGAAGTGACTCCAATGTTAGTAAAGTAACTAGAAGTTTGACCATGAAGTGACCAAAACATTATTACCACAGAATCTGAAATTCAAAAGGCAGCTGGTGAAGAACGGACTGTTTGTGTTCTCCTGGAATTAGTTAGATAAAGTCAGTCAATATAGaatctgtgttttgtttttttaaataactacatTTTGTTTATGATCCTCAGCTAAAGGAAACAAGACTGCATCAGTGTTGTCACTTAATTTTAAAGGGTACATATAATGAAAAACTCTCATTTTCAGTCATGGTGCACAAACATTTGAGTATCTGGAGGGCCGACCAACCCAAAACCTGAAATCAAACAACCCAGCCAGTTCTTTGTGGGCATCCTCAATCTGAAAACATGTTATTGATTACTGGCCCGCGTACTGCAGCGATTGTTTCGgcgtctcctctatttctttGCCGCGAGCAAATGTGTTAAGCCAGGAAGGTAATCATATACAGAAGGGCCACAGCACAGCcggatatattttatatataaagtcCATGGATTCAAAATTTTAAAACCGCCATGTTTGCAGTTGGAGGTGTTCTGGCAGCATTTTCACAGACGTCTTTTTTACAATGGTGGTCCACAGGATCCTTTCTGGGTCACTGGGAGGTTTTTGTTGCAATGCTGCGAGTGTCCACTggacaaaatatattttataataataatatgtctcCTTTAAAAGATAATGTTGAGATACCTCCTGGCAGGATCGGTGGTTTGATCCCCGCCTCTTCTTGTCCACTCGtccaagtgtccttgagcaagacactgaaccccaaattgctcccgaTGGTCAGACAGCTCCTTGTATGGTAGCTCCCTGTCATCGGTGTGAATGGATGAATTACATATAAACTGCTTTATTAATATTATCCTGCTGCTTGTGGTTGTTAAAAGTCCTAACTGAGCTAGATGTGATGGGCATtagaaaacagaacttttatGATCAAAGCCTGCTGTCACGATGTAAAAgaaatatgatttattttttgtagccaaagtaaaatataatgtgacttatttttttattttgatatttgtgTAATTGACATTACAATCATGTTCTGCTTCTTTTATTTCTCAAGTTGCTAACCCAGAGTTTGTCAGGTTGAACTATACACTGTTGTTGGCTGTAATATCAGAATTGTCATTTCTATCTAAATAAAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59769 lncRNA upstream 11288 40411768 ~ 40432585 (+) True G44635
TU59750 lncRNA upstream 12718 40412611 ~ 40431155 (+) False G44621
TU59822 lncRNA upstream 50167 40387566 ~ 40393706 (+) True G44680
TU59803 lncRNA upstream 132236 40305214 ~ 40311637 (+) True G44664
TU59799 lncRNA upstream 142066 40299296 ~ 40301807 (+) True G44660
XR_005639007.1 lncRNA downstream 28548 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 71749 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 86370 40713681 ~ 40933867 (+) False G44711
TU59861 lncRNA downstream 86370 40713681 ~ 40934131 (+) True G44711
TU59762 lncRNA downstream 89490 40716801 ~ 40775058 (+) True LOC120557697
XM_039798212.1 mRNA upstream 12532 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 669623 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 669623 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 1130191 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 1166894 39249166 ~ 39276979 (+) True LOC120557665
XM_039798225.1 mRNA downstream 17877 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 39541 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 57511 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 94385 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA downstream 94385 40721696 ~ 40734477 (+) False LOC120557681
TU59760 other upstream 280263 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 621965 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1462140 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 1540817 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1830902 38612637 ~ 38612971 (+) True G44436
XR_005638994.1 other downstream 38888 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1123692 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1242419 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1269711 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1278218 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile