RNA id: TU59771


Basic Information

Item Value
RNA id TU59771
length 236
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G44637
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40602563 ~ 40603037 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATACGTTATTTTGAAAGTTTGTCGAGCGGCGCTAAAGCTAAACGAGGAATATAATCAACTTTTATTCGCGTTATTTTTACTTCCGCTTGAATTTAAACGGGGTAAATTTAATCTGTGGACTTTTGTTATTCAAAACGAAGCCCGTTTGTTTATAAATGTCTGTTTTTCGAccgttaaatacattttaactgCGGCTAGACAGGAGAGCAGAACAGGGGAAAATATCCCAGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59764 lncRNA upstream 54715 40537311 ~ 40547848 (+) True LOC120557674
TU59749 lncRNA upstream 57188 40431541 ~ 40545375 (+) True G44621
XR_005638999.1 lncRNA upstream 96578 40504194 ~ 40505985 (+) True LOC120557692
TU59831 lncRNA upstream 107941 40472624 ~ 40494622 (+) True G44689
TU59769 lncRNA upstream 169978 40411768 ~ 40432585 (+) True G44635
XR_005639007.1 lncRNA downstream 52822 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 96023 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 110644 40713681 ~ 40933867 (+) False G44711
TU59861 lncRNA downstream 110644 40713681 ~ 40934131 (+) True G44711
TU59762 lncRNA downstream 113764 40716801 ~ 40775058 (+) True LOC120557697
XM_039797160.1 mRNA upstream 18858 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 61332 40519942 ~ 40541231 (+) False LOC120557674
XM_039797157.1 mRNA upstream 155917 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 171222 40156219 ~ 40431341 (+) True LOC120557666
XM_039798234.1 mRNA upstream 828313 39747173 ~ 39774250 (+) False LOC120557680
XM_039798225.1 mRNA downstream 42151 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 63815 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 81785 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 118659 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA downstream 118659 40721696 ~ 40734477 (+) False LOC120557681
XR_005638993.1 other upstream 61332 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 95993 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 96507 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 438953 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 780655 39813960 ~ 39821908 (+) False G44581
XR_005638994.1 other downstream 63162 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1147966 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1266693 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1293985 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1302492 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile