RNA id: TU59801


Basic Information

Item Value
RNA id TU59801
length 908
lncRNA type read_through
GC content 0.34
exon number 2
gene id G44662
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40291364 ~ 40292492 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTTATTCAAGATTTTGAATAGTagtaatatttgaatatatttaaatttaaatgataAAAGGCACTTTATTATCGATTAACATAAATATCGCAAGAACACAAGTACAGAGAGGCTTTTTtctaaatacttttttctttgGCTATCTGCTTTTAAAAGATAGTGATAGAGACAGTCAGGAAAGGCAGGagatgacctgcagcaaagggccctgTGGTGGACTCAAACCAAAGGCACTGTGGTGAGGACTCTACCCGGTGACCCCCCAGGGCACTTTATTCACTTTCTCACtgagttagataagaagatcaataccacatCTCAGCCTTTACTATTCTTCTAATTACAAAAGCAAGAAATGATTGTCTAAAGAGCAAACAAGagtaataaaacacaatatataataacaaaaacattaaatgaaGTGACCTTTTTTACACAATATTTCACACTTCAAACCAACACAGAAAACGTTGTAATTATGTctgaatacaaaaatacaagacTTATAAGAGCATCATCATGTTGACCTGGTCCTCTCTGCTCTACACACCTCTGGAACAGGAATACTGCAGTACAAGTCTTACACACagttgtaacagttgtgtaacaaAACAcactataaaatgtaaaataattaaatgaaatgaCCATTTTTTTGCACAATATTTCACACTTCACATCATCACAGCAAACAGGAATACTGTACATGTCTTACAAACAGTTACACAATCAAGTAGAACTGCAAGACTAAATCAATGAGCCTATAAATTGTGATATAACACAAGCATAAAATactgaaaactaaataaatgtttccaacaacaCAGACATTATCAAAGCCTTTCTTCCATCATGAATGGATGAAGTGCATTTGGCTCTGGAGTTGAACCTGcaggaaaaaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59718 lncRNA upstream 15524 39960376 ~ 40275840 (+) True G44595
TU59677 lncRNA upstream 63844 39774613 ~ 40227520 (+) True G44562
TU59780 lncRNA upstream 123735 40165484 ~ 40167629 (+) True G44645
TU59779 lncRNA upstream 124837 40165484 ~ 40166527 (+) False G44645
TU59781 lncRNA upstream 125354 40165484 ~ 40166010 (+) False G44645
TU59802 lncRNA downstream 6135 40298627 ~ 40299270 (+) True G44663
TU59799 lncRNA downstream 6804 40299296 ~ 40301807 (+) True G44660
TU59803 lncRNA downstream 12722 40305214 ~ 40311637 (+) True G44664
TU59822 lncRNA downstream 95074 40387566 ~ 40393706 (+) True G44680
TU59769 lncRNA downstream 119276 40411768 ~ 40432585 (+) True G44635
XM_039798233.1 mRNA upstream 517114 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 517114 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 977682 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 1014385 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 1149014 39122788 ~ 39142350 (+) True LOC120557683
XM_039798224.1 mRNA downstream 227450 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 262458 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 352696 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 374360 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 392330 40684822 ~ 40716121 (+) True LOC120557684
TU59760 other upstream 127754 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 469456 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1309631 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 1388308 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1678393 38612637 ~ 38612971 (+) True G44436
TU59833 other downstream 188184 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 211860 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 227450 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 373707 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1458511 41751003 ~ 41763651 (+) False LOC120557139

Expression Profile