RNA id: TU59803



Basic Information


Item Value
RNA id TU59803
length 1268
lncRNA type read_through
GC content 0.40
exon number 2
gene id G44664
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40305214 ~ 40311637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cacacacacacacaagggagagagagggggaaaataTGCAGGAATACTGTACAAGTCTTACAAACAGTTACACAATCAACTAGAACTGCAAGACTAAATCAGTGAGCCTAGACATTGTGATATAACACAGGcataaaataactgaaaacaaaataattttttttcaacacagaCATtatccagtccctccaggatttcgcgatcACAACAATTtacgcaaattcaaccaatcaccgtgaatttggtgcgactcacaattttgaccaatcaccgcaacttttccccaaatttgaccaataaccggagtttcccgcgacttcaaccaatcccagcagtcccacgtgccagactttgtatcagtatgtgactctgagagccactgaccaagcgggagtgagaacgggtcaaattaatttccttgtttctgatacaaagacgagacgtgtgtgactcaaacatctcacatttaccaagaaaacgtacagcgaaagacacaaaaccatttcagaccgtcctgccaacctgtatacattgtaacatcaatgtacgctgtaacgatttttcactctaaagctGCTACGGTTTCAATCCTgttggctctctgcagcgggagAGCTGCTGCTCATACAGCTCCTCCCCGCGactgagcgcacacacacacacacacaacacacacacacacgaacgcacacacacacggtggatgcaggaaaaaccagagatgagacgacacaatgacctaaattgaggacagctacgctcgttattggaagcgcaatgataagttaaactacaataagtcctttatcaaaccgtatgaatgtgtgtcccaggccaggataggaaagtaactaacaatgtaaagatcaacaagccacaaacacatatgttcatatttgattcattcaatacattattttttgtcttaaatccaccagccattttcatattataccaacattggcagcatcctgagccttttgggTAAGgttactaggaaatctcagcccagagtaattctattctccccaaaacaagtttcctttttatttttaaagaactataccaAAACAAATGGAACTTTTTTTGGCAATTTGTTTCTcttgcaacttcattgcaacaaacatacaaaagacattgcaacttgTATCGCGATTTTTTTAcagctcccgcaaaatcaggcattttgggccgcaataAGTTAAAATACTTTAACTGTTTAAGCATGTAGTGTATTACTTATAATACTCATAACCTacattaaatat

Function


GO: NA

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU59799 lncRNA upstream 3407 40299296 ~ 40301807 (+) True G44660
TU59802 lncRNA upstream 5944 40298627 ~ 40299270 (+) True G44663
TU59801 lncRNA upstream 12722 40291364 ~ 40292492 (+) True G44662
TU59780 lncRNA upstream 137585 40165484 ~ 40167629 (+) True G44645
TU59779 lncRNA upstream 138687 40165484 ~ 40166527 (+) False G44645
TU59822 lncRNA downstream 75929 40387566 ~ 40393706 (+) True G44680
TU59769 lncRNA downstream 100131 40411768 ~ 40432585 (+) True G44635
TU59750 lncRNA downstream 100974 40412611 ~ 40431155 (+) False G44621
TU59749 lncRNA downstream 119904 40431541 ~ 40545375 (+) True G44621
TU59768 lncRNA downstream 132236 40443873 ~ 40627311 (+) True G44634
XM_039798233.1 mRNA upstream 530964 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 530964 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 991532 39294637 ~ 39313682 (+) True LOC120557118
XM_039798211.1 mRNA upstream 1028235 39249166 ~ 39276979 (+) True LOC120557665
XM_039798239.1 mRNA upstream 1162864 39122788 ~ 39142350 (+) True LOC120557683
XM_039798224.1 mRNA downstream 208305 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 243313 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 333551 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 355215 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 373185 40684822 ~ 40716121 (+) True LOC120557684
TU59760 other upstream 141604 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 483306 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1323481 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 1402158 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1692243 38612637 ~ 38612971 (+) True G44436
TU59833 other downstream 169039 40480676 ~ 40506570 (+) True G44690
TU59835 other downstream 192715 40504352 ~ 40506056 (+) False LOC120557692
XR_005638993.1 other downstream 208305 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 354562 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1439366 41751003 ~ 41763651 (+) False LOC120557139

Expression Profile