RNA id: TU59835


Basic Information

Item Value
RNA id TU59835
length 1613
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC120557692
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40504194 ~ 40506056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaCTTCCGCCAGTGAACATTTTAGTAATCAGGCTAAAGGACTTGCACCTGGGAGCCAGAGAAGGTATTGACTGGGTTTTAGGTAAAAAAAGGCATGCAGCGAAGAAGCACATGATGGAGGACACAGAGAGCGAAGAAGCACATGATAGAGCACACTGAGAGCGAAGAAGTACATGATAGAGGACACTGAGAGCGAAGAAGTACAAGAGACCAACAGGAGAACATGAAGGAGGATATGGAGAGAATGAGAGCACCACAGACGGAAAGGAACAGACAGAGGAGCAGACACAGAGGAGTGgacggacagacacagagaaactCAAACACCAATCGCTACAGCAGCAACAGTGGGAGAATGTAAAACTTCTCCCTTCCGCGCTATGCCCCAGGAGAGGAGCCAAACGGCAAAGAAGCTGGTTGCCAGCGAAAGCCTGTGGACATTTTAATCTATCACTCCTGTTCTGTTGGACTGTTTTTAGCTTGATTTTAGTGGGTTCTCTTTTAGTTGTCGGCCCTGTACGCTATTTTATAGTTTATCCGCGCTCACgcgcgcccccccccccttcttacagttcaggggacaggcagctcacAGATAGcaaggagatgtttgctgtatgtgacaaaagaCGTTGCCTAAAAAACAATGACATTGCTTAGAGTACCTTTTTAATATTGACATCATTGTTCGCAATGTGACTGTTTTTTCAGCTGAAACTTGCATAAAAGGAATACCATGATTTAAGTTCATGTTAGGAAAATGATGCTTACTAGCAAACTGTTctgtttcatttttatttgttaaaccGTTTGCATCAAAACTACTGTTTTAGTATTTCTGTCTTTCATTAGTCTAGCTATCAccgaccaagctcaatcttttaagattgaacattagtctggggagtctgctctgtattttctcagcacaggtaaaagaaaatctgtgcCCTATGCCCGTGTGATCagcgggcatagttcaaatgactctgtacgcaattggatattccttcaaccaatcagaccaatgatcTGGGTGACgtacgggttgctgcgcttcggtggccgccatgtggaatgtaaacaaaaagctgcttgccgtctcttctctatcgtcattgtGTTAAACCCACCAATAGCGCGCCCGGTGGATAAGctagtttgtgattggtccccgcagatttgGAACCGAAGCAGGATGGAaaaatgtacaggtttccagcctgaccTGCAGGGACATCAAATTGCAGGCAGatggggctgggtttacccagtctttCATGTGTTAATCATGAAGCTGAGTCACTTTGCAAGGAGCACAGAATGCACCCATGAGGGCAGAGCGCATAATGTGGAGGAAATGTCGAGCTTGACGAATGATGAAGAAGAAAGTTACTGATTATGTGAAATGTATAACTAATTTGACTCCCTGCTCCTTAAAAGAGCCTCTGTTGAGATCACTAGTCAGTCATGTTTCGGTGCTTACACTgagtgctgtaaactgactcTGCTTGTGCAAGTAAAACAAGCTTTTGAAGTAGATTCCAGAGATTCTGTCATTATTTGGTAAATTATATATAACACTTTACAACCCCCCCAAAACTGAAATACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59831 lncRNA upstream 9730 40472624 ~ 40494622 (+) True G44689
TU59769 lncRNA upstream 71767 40411768 ~ 40432585 (+) True G44635
TU59750 lncRNA upstream 73197 40412611 ~ 40431155 (+) False G44621
TU59822 lncRNA upstream 110646 40387566 ~ 40393706 (+) True G44680
TU59803 lncRNA upstream 192715 40305214 ~ 40311637 (+) True G44664
TU59764 lncRNA downstream 31255 40537311 ~ 40547848 (+) True LOC120557674
XR_005639006.1 lncRNA downstream 95372 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA downstream 96507 40602563 ~ 40603037 (+) True G44637
XR_005639007.1 lncRNA downstream 149803 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 193004 40699060 ~ 40719215 (+) True G44622
XM_039797157.1 mRNA upstream 57706 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 73011 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 730102 39747173 ~ 39774250 (+) True LOC120557680
XM_039798234.1 mRNA upstream 730102 39747173 ~ 39774250 (+) False LOC120557680
XM_039797151.1 mRNA upstream 1190670 39294637 ~ 39313682 (+) True LOC120557118
XM_039798224.1 mRNA downstream 13886 40519942 ~ 40541231 (+) False LOC120557674
XM_039797160.1 mRNA downstream 48894 40554950 ~ 40583705 (+) True LOC120557127
XM_039798225.1 mRNA downstream 139132 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 160796 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 178766 40684822 ~ 40716121 (+) True LOC120557684
TU59760 other upstream 340742 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 682444 39813960 ~ 39821908 (+) False G44581
XR_005638992.1 other upstream 1522619 38953118 ~ 38981733 (+) True LOC120557670
XR_005638991.1 other upstream 1601296 38900572 ~ 38903056 (+) True LOC120557667
TU59524 other upstream 1891381 38612637 ~ 38612971 (+) True G44436
XR_005638993.1 other downstream 13886 40519942 ~ 40541231 (+) False LOC120557674
XR_005638994.1 other downstream 160143 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1244947 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1363674 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1390966 41897022 ~ 41902618 (+) False dynlrb1

Expression Profile