RNA id: TU59858


Basic Information

Item Value
RNA id TU59858
length 653
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G44711
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40713681 ~ 40938117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtggttagccagctcatttcggactgtgacgtcacagtccgagccgattttgaacagctcactaggagactaaaggcaggacacattcagaaaccgtatctcactcagaacagcatggatggatttttttcaaagtttgtatgtgtgtggaagcaccagagacacaaaagaacaccccaaatcccagaaaaagtgattttttcataatatgggcactttaaagagagttagttgtgggttattaattgttgtgttataaagttactaccatgagtgagaagggtacgcagttaacgGGTCCAGTGAGGCTacggagaagaaaaaaaaaaaaactggatatattttgtcaatatcggggccgatcctaatatcggatcggtgtACTCCTAGTAACCCCCTTTTTCCCGTTTTCTGAGGCTGACAGAGGGTTTTCTGAGGCTGCTTTTTCTGGGATTGAAAGAGGTTTTTCTGACGCTGAGGCCGTTTTGTTTGAGTCTGACACCTGAGTCTGAGATCTGACGATGTCCTAAAATGAACACTGTACTCAGGTTTTAAGATTGAGCTCAGAATCAGGTTTGGGTTAAACATTTAGATCTGAAGTTTGATGTTAAGGAATGCATTATTTCAACCAGTGTCCTCACAAGTATAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59759 lncRNA upstream 1196 40848815 ~ 40930833 (+) False LOC120557312
TU59882 lncRNA upstream 64422 40827420 ~ 40867607 (+) True G44731
TU59862 lncRNA upstream 137231 40729150 ~ 40794798 (+) True G44712
TU59766 lncRNA upstream 148217 40738910 ~ 40783812 (+) True G44632
TU59762 lncRNA upstream 156971 40716801 ~ 40775058 (+) True LOC120557697
TU59767 lncRNA downstream 11804 40949921 ~ 41025342 (+) True G44633
TU59903 lncRNA downstream 107727 41045844 ~ 41077132 (+) True G44751
TU59904 lncRNA downstream 107727 41045844 ~ 41077132 (+) False G44751
TU59905 lncRNA downstream 107727 41045844 ~ 41077132 (+) False G44751
TU59911 lncRNA downstream 366661 41304778 ~ 41305781 (+) False G44757
XM_039797515.1 mRNA upstream 646 40922588 ~ 40931383 (+) True LOC120557312
XM_039797516.1 mRNA upstream 646 40922588 ~ 40931383 (+) False LOC120557312
XM_039797509.1 mRNA upstream 17775 40872849 ~ 40914254 (+) True LOC120557310
XM_039797511.1 mRNA upstream 17775 40872849 ~ 40914254 (+) False LOC120557310
XM_039797510.1 mRNA upstream 17775 40872849 ~ 40914254 (+) False LOC120557310
XM_039797514.1 mRNA downstream 23591 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA downstream 31103 40969220 ~ 40989919 (+) False LOC120557311
XM_039797163.1 mRNA downstream 420024 41358141 ~ 41360354 (+) True LOC120557130
XM_039796702.1 mRNA downstream 424386 41362503 ~ 41365014 (+) True LOC120556884
XM_039797165.1 mRNA downstream 468426 41406543 ~ 41412621 (+) True LOC120557132
XR_005638994.1 other upstream 264523 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 390798 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 425459 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 425973 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 768419 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 812886 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 931613 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 958905 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 967412 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 967490 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile