RNA id: TU59859


Basic Information

Item Value
RNA id TU59859
length 580
lncRNA type read_through
GC content 0.34
exon number 2
gene id G44711
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40713681 ~ 40938117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaaaattcaggtcttagtccatgactacaccaagatttctggctttgtcttttgtttttaacattgtcgtttgaagctgagtgctgacttTAATCGTtactcttttgctccaaaaacaaccacctcagttttttcGAACCGTCTAATCAAAATGTCCGATGATAGAAGTTAGTTGGAGATAATGATGGTCTGACGATTTTACTGTAAAAAGATATTTAAgctgattttctatttttgtactTTCTGATGTTTGAAATGTCTACGCTGCACTCTGCTCTTTGTTGTATGAATTTACAATGTGTTGTCGGTCCATGCGGGCTGGCCATAGTTATATACATGACGTCATGATCAAAATGTCATTCATTCAATTATTCTAAAACTCAAAGGAAGCTTGTGAAATGAGGCAATTATGGTTGATACTATTTTCTCTTCCTCTAAAAGTGGTTTAAAGTTCAGAAGTCTGAATAAGTTCAACTAGAGagtgactttattcttaatTCTGAATAAAGAAGAACTCTCTTCCAGATATGAATGACTTGATAATCATTATGAAGATAAAGTTGTGATAATAATACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639007.1 lncRNA upstream 57035 40655859 ~ 40656646 (+) True LOC120557700
XR_005639006.1 lncRNA upstream 104117 40601428 ~ 40609564 (+) True LOC120557699
TU59771 lncRNA upstream 110644 40602563 ~ 40603037 (+) True G44637
TU59764 lncRNA upstream 165833 40537311 ~ 40547848 (+) True LOC120557674
XR_005638999.1 lncRNA upstream 207696 40504194 ~ 40505985 (+) True LOC120557692
TU59767 lncRNA downstream 16054 40949921 ~ 41025342 (+) True G44633
TU59903 lncRNA downstream 111977 41045844 ~ 41077132 (+) True G44751
TU59904 lncRNA downstream 111977 41045844 ~ 41077132 (+) False G44751
TU59905 lncRNA downstream 111977 41045844 ~ 41077132 (+) False G44751
TU59911 lncRNA downstream 370911 41304778 ~ 41305781 (+) False G44757
XM_039798243.1 mRNA upstream 44939 40666852 ~ 40668742 (+) True LOC120557687
XM_039798225.1 mRNA upstream 66167 40645188 ~ 40647514 (+) True LOC120557675
XM_039797160.1 mRNA upstream 129976 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 172450 40519942 ~ 40541231 (+) False LOC120557674
XM_039798212.1 mRNA upstream 282340 40156219 ~ 40431341 (+) True LOC120557666
XM_039797514.1 mRNA downstream 27841 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA downstream 35353 40969220 ~ 40989919 (+) False LOC120557311
XM_039797163.1 mRNA downstream 424274 41358141 ~ 41360354 (+) True LOC120557130
XM_039796702.1 mRNA downstream 428636 41362503 ~ 41365014 (+) True LOC120556884
XM_039797165.1 mRNA downstream 472676 41406543 ~ 41412621 (+) True LOC120557132
XR_005638994.1 other upstream 46175 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 172450 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 207111 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 207625 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 550071 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 817136 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 935863 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 963155 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 971662 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 971740 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile