RNA id: TU59913


Basic Information

Item Value
RNA id TU59913
length 213
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G44758
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41305908 ~ 41306120 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagtgatttgctcgcagcaactgaagccccgtggtgaggagcagagagttggCCTGGAGTtggctcagagttggagtaatatcactccgcccaagtagcagaagcagcagtgcttcgccttctgagaatatagttcccagtatgtatacggttagaagatggctgtgtgtcatgtgaccttgttatttgtacacgctgtgactatagaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59911 lncRNA upstream 127 41304778 ~ 41305781 (+) False G44757
TU59912 lncRNA upstream 127 41304778 ~ 41305781 (+) True G44757
TU59903 lncRNA upstream 228776 41045844 ~ 41077132 (+) True G44751
TU59904 lncRNA upstream 228776 41045844 ~ 41077132 (+) False G44751
TU59905 lncRNA upstream 228776 41045844 ~ 41077132 (+) False G44751
TU60340 lncRNA downstream 75102 41381222 ~ 41387063 (+) True G45095
TU60379 lncRNA downstream 181212 41487332 ~ 41493634 (+) False G45119
TU60381 lncRNA downstream 185552 41491672 ~ 41501091 (+) True G45119
TU60444 lncRNA downstream 396514 41702634 ~ 41703077 (+) True G45174
TU60456 lncRNA downstream 452583 41758703 ~ 41763651 (+) False LOC120557139
XM_039797514.1 mRNA upstream 315988 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA upstream 315989 40969220 ~ 40989919 (+) False LOC120557311
XM_039797515.1 mRNA upstream 374525 40922588 ~ 40931383 (+) True LOC120557312
XM_039797516.1 mRNA upstream 374525 40922588 ~ 40931383 (+) False LOC120557312
XM_039797510.1 mRNA upstream 391654 40872849 ~ 40914254 (+) False LOC120557310
XM_039797163.1 mRNA downstream 52021 41358141 ~ 41360354 (+) True LOC120557130
XM_039796702.1 mRNA downstream 56383 41362503 ~ 41365014 (+) True LOC120556884
XM_039797165.1 mRNA downstream 100423 41406543 ~ 41412621 (+) True LOC120557132
XM_039796466.1 mRNA downstream 319087 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA downstream 319706 41625826 ~ 41628189 (+) True LOC120556749
XR_005638994.1 other upstream 638402 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 764677 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 799338 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 799852 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 1142298 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 444883 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 563610 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 590902 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 599409 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 599487 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile