RNA id: TCONS_00073757


Basic Information

Item Value
RNA id TCONS_00073757
length 586
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_037537
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 461143 ~ 470097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaagcatttttgctgTGTTCAGAGATTGACTCTGAGTCTGTTTTTAAGTGATTTGCTTTGTTTCAGCTCTCAGTCAAACATCACTTTTGTCTCAAAATGAAAGGCCGGATGAGGAGAACAGATCAGACAGTCCAGGTGTAAATGAGGAAGAAAAACTTCTGAATCCCAGTGGAAATGAGGGAGAGCAGTGCAATTATGTGAACAGTCCGCATACATTTGTAGCAGTAGGAAATGCCAGCAGTCAACCTAATGTAACTCTGAACCGAAAACCCCTAGAAGACCAAGATAAAGTGAAGGATGGACAAAGAGAGAAACCGGAAGAACAAAAGACTGATAATGCTAAGAATAATGAGAAAAATGACAAAGTAGCAGGAAAGGAAAAGGAGAAGAAAAAGGAGCAACAAAACACAGcagatgcccttccagccgtaacccagccctgggaaacaaccatacacactcattcacaagctgaaaaaaattacaaactaccaggagagaaaaacaaagagaaaaacaaaGAGGAAAATGGGCAACCAAACACAGAATTACCTGAAAATACACACCAAGATTTAAACAGGCAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-357 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct.

Ensembl:

ensembl_id ENSDART00000169826

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075252 lncRNA downstream 23416 434375 ~ 437803 (-) True XLOC_037533
TCONS_00075251 lncRNA downstream 23420 434375 ~ 437799 (-) False XLOC_037533
TCONS_00073751 lncRNA downstream 46731 408977 ~ 414488 (-) True XLOC_037532
TCONS_00073750 lncRNA downstream 51621 407678 ~ 409598 (-) False XLOC_037532
TCONS_00074956 lncRNA downstream 197456 257549 ~ 263763 (-) True XLOC_037522
TCONS_00074957 lncRNA upstream 277448 740669 ~ 746147 (-) True XLOC_037540
TCONS_00075253 lncRNA upstream 294372 757593 ~ 758416 (-) True XLOC_037541
TCONS_00075254 lncRNA upstream 309642 772863 ~ 773656 (-) True XLOC_037542
TCONS_00073771 lncRNA upstream 417527 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075255 lncRNA upstream 563794 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073755 mRNA downstream 489 458758 ~ 460730 (-) True XLOC_037536
TCONS_00073754 mRNA downstream 1309 458751 ~ 459910 (-) False XLOC_037536
TCONS_00073753 mRNA downstream 4678 445471 ~ 456541 (-) True XLOC_037535
TCONS_00073752 mRNA downstream 17768 440196 ~ 443451 (-) True XLOC_037534
TCONS_00073749 mRNA downstream 57452 396346 ~ 403767 (-) True XLOC_037531
TCONS_00073758 mRNA upstream 1289 464510 ~ 470038 (-) False XLOC_037537
TCONS_00073759 mRNA upstream 3779 467000 ~ 470097 (-) True XLOC_037537
TCONS_00073761 mRNA upstream 121719 584940 ~ 695000 (-) False XLOC_037538
TCONS_00073760 mRNA upstream 121719 584940 ~ 695000 (-) True XLOC_037538
TCONS_00073762 mRNA upstream 238231 701452 ~ 704667 (-) True XLOC_037539
TCONS_00073774 other upstream 540220 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073777 other upstream 916155 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073788 other upstream 1181462 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 1285698 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 1468219 1931440 ~ 1934086 (-) True XLOC_037564

Expression Profile

//