RNA id: TCONS_00073759


Basic Information

Item Value
RNA id TCONS_00073759
length 611
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_037537
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 461143 ~ 470097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGACTCCGCCCATCCTCAAAAGTCACCTGATACTGCTGTTTTTTTCACTTTCGGTATTCGCgactttaaaacaaaacaactttatcatttattctctttttttgttttctttgtcgaGATTTAAGCAGCAGATGAGTTTTACACTTCACACCGACATTAAATAACACGCGGTTAGAGGAGAAACTAACTAACAGCCAGGAGCTGAAATGGAGTTTGTGGTGCGGGTTTTGCTGTTCTTTACCTGCTTCTGTTTTCAAGattttgttttttgtgaGGACTATGCAGAAATGGGAGGCCGGATCACGTTTACTCCCAGCATTCGTGGAAAGCCTGTAGAAATCCTGTGGAAACACAATGGAGATAAGGTTGTGGAGTATGACAACAGGGAGACGGAGGAATTCGGATCATTCAAAGACCGGGTGGTGATTGATTTCGAAACAGGACAGCTCACAATAAAGAAACTGACCAGTCAAGACAGCGGACAATACCAGTCTGACATCACGATCAACGGGAAAGTCCAGAGCTCCAGACATACTTTAACTGTTCTGGATGTTCTTCCAGATCCTCGAGTGACCTGTGCAGTGAACAAGACCTCAAATCTTCAAGAGCT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-357 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct.

Ensembl:

ensembl_id ENSDART00000162054

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073757 lncRNA downstream 3779 461219 ~ 463221 (-) False XLOC_037537
TCONS_00075252 lncRNA downstream 29197 434375 ~ 437803 (-) True XLOC_037533
TCONS_00075251 lncRNA downstream 29201 434375 ~ 437799 (-) False XLOC_037533
TCONS_00073751 lncRNA downstream 52512 408977 ~ 414488 (-) True XLOC_037532
TCONS_00073750 lncRNA downstream 57402 407678 ~ 409598 (-) False XLOC_037532
TCONS_00074957 lncRNA upstream 270572 740669 ~ 746147 (-) True XLOC_037540
TCONS_00075253 lncRNA upstream 287496 757593 ~ 758416 (-) True XLOC_037541
TCONS_00075254 lncRNA upstream 302766 772863 ~ 773656 (-) True XLOC_037542
TCONS_00073771 lncRNA upstream 410651 880748 ~ 889567 (-) True XLOC_037546
TCONS_00075255 lncRNA upstream 556918 1027015 ~ 1028650 (-) True XLOC_037550
TCONS_00073756 mRNA downstream 2263 461143 ~ 464737 (-) False XLOC_037537
TCONS_00073755 mRNA downstream 6270 458758 ~ 460730 (-) True XLOC_037536
TCONS_00073754 mRNA downstream 7090 458751 ~ 459910 (-) False XLOC_037536
TCONS_00073753 mRNA downstream 10459 445471 ~ 456541 (-) True XLOC_037535
TCONS_00073752 mRNA downstream 23549 440196 ~ 443451 (-) True XLOC_037534
TCONS_00073761 mRNA upstream 114843 584940 ~ 695000 (-) False XLOC_037538
TCONS_00073760 mRNA upstream 114843 584940 ~ 695000 (-) True XLOC_037538
TCONS_00073762 mRNA upstream 231355 701452 ~ 704667 (-) True XLOC_037539
TCONS_00073763 mRNA upstream 236989 707086 ~ 710896 (-) False XLOC_037540
TCONS_00073764 mRNA upstream 237792 707889 ~ 712308 (-) False XLOC_037540
TCONS_00073774 other upstream 533344 1003441 ~ 1003555 (-) True XLOC_037549
TCONS_00073777 other upstream 909279 1379376 ~ 1379490 (-) True XLOC_037555
TCONS_00073788 other upstream 1174586 1644683 ~ 1644761 (-) True XLOC_037561
TCONS_00073793 other upstream 1278822 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073794 other upstream 1461343 1931440 ~ 1934086 (-) True XLOC_037564

Expression Profile

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