RNA id: TU60379


Basic Information

Item Value
RNA id TU60379
length 335
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G45119
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41487332 ~ 41501091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCTCTGCAAATgacacacactggctgctgatggtccagacagaagagtttgagtttctcagagtgcagactgcagagagcctctgaagctctctgatctctctccaGTAAGAAGGCCTCACACAGGTTCTTTAACACCAGGTTACAAGGTGGTTCATACAAAGATCTTTTCTTACAAACTGGACACTCCTGTGTTGGTTTCTCTGTCCACCAGCTCTGCAGACAGTctttacagaagctgtggctacatGACAGAAGAACAGGATCTCTGAAGACATCATGACAGACCGGACAGCGGAGATCCTCCTCTGATCTGGAAGCCATTTGGTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60340 lncRNA upstream 100269 41381222 ~ 41387063 (+) True G45095
TU59913 lncRNA upstream 181212 41305908 ~ 41306120 (+) True G44758
TU59911 lncRNA upstream 181551 41304778 ~ 41305781 (+) False G44757
TU59912 lncRNA upstream 181551 41304778 ~ 41305781 (+) True G44757
TU59904 lncRNA upstream 410200 41045844 ~ 41077132 (+) False G44751
TU60444 lncRNA downstream 209000 41702634 ~ 41703077 (+) True G45174
TU60456 lncRNA downstream 265069 41758703 ~ 41763651 (+) False LOC120557139
TU60474 lncRNA downstream 362026 41855660 ~ 41858286 (+) True G45193
TU60469 lncRNA downstream 418530 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA downstream 418530 41912164 ~ 41915303 (+) False G45190
XM_039797165.1 mRNA upstream 74711 41406543 ~ 41412621 (+) True LOC120557132
XM_039796702.1 mRNA upstream 122318 41362503 ~ 41365014 (+) True LOC120556884
XM_039797163.1 mRNA upstream 126978 41358141 ~ 41360354 (+) True LOC120557130
XM_039797514.1 mRNA upstream 497412 40961708 ~ 40989920 (+) True LOC120557311
XM_039797513.1 mRNA upstream 497413 40969220 ~ 40989919 (+) False LOC120557311
XM_039796466.1 mRNA downstream 131573 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA downstream 132192 41625826 ~ 41628189 (+) True LOC120556749
XM_039797171.1 mRNA downstream 245691 41739325 ~ 41743157 (+) True LOC120557138
XM_039797172.1 mRNA downstream 257416 41751050 ~ 41768313 (+) True LOC120557139
XM_039796472.1 mRNA downstream 403361 41896995 ~ 41902631 (+) True dynlrb1
XR_005638994.1 other upstream 819826 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 946101 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 980762 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 981276 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 1323722 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 257369 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 376096 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 403388 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 411895 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 411973 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile