RNA id: TU60381


Basic Information

Item Value
RNA id TU60381
length 1951
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G45119
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41487332 ~ 41501091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGAATAGAATTGAAAATAAagttagtttgatttaaataatGATTGTCTGCTCAAACATTCAGTTATATTTTTGTGATCAAATCAGCTTCTACAAAGTGTTTTCTGTCTTCCTGGCTCTACACACACTAGTCAAACTAataaaacatcaacaacaatttaaaataaaaacagtattgataaaaaagcaaaaggctaaATGAACCAAAagataaaaaactaaattatataattttacacatgaaaaaaataaaacttgcttTTGACTGCATCACTTGAATTTTTGGGTTGTATTGTAAATCggttggataaaagtgtcagctagatgaattacaaaaaataggtaaacaaaaacaaagaatgtcAAACTAAAACAATAAGTAAAACTAAACATATATCTTAAACGAAAAAACAAggatatttttgtattaatgaGAAATTAGGACAGGTGCAGATTAAGAGGTTACATTCAGCGACTTTTCCCTTTAAGAAATAAACATCAACATGAATATAATCATCCTCTTTATCTCTAACTGCTCTGctccactgtcacacacactttcactggtgATATCTTCAGTGGGACTTCATCCCAAGTGCTAATATACGGAAACATCTTCTCAGTGAAAAGCAATTGAAATATCCTTCTACGGAAAGTTTGTATGGCggtgaaggtgtgtatgtgtgtgttagtatcagCATCAGAGAACGACAGCTCTCCTGTCTTCACGTCCAGAGTCACTCTGATCCTCTGGAGCTTCTTCTGCAGTACGAGAACAGTGGCTGGAGCTTGTGCTGACCGTGCTGAGTATTTACCTTTATGGAACAATATTCTCCGTAATCCAGACTGTatgcctcccttcctctggacaGACTCTGCTAACACTCCCAGTGACCAGCCTGTACTGTCTCCAACCTCGAcatcccagctgtgagtccctgagttaaagccctcagagcccaggacAGAGCATAGATAATCAAACCTCTCTGGGTTATCAGGAAGCTGCTGTCTCTTTCCTAGTCTCACACTGGTCAGATCTTCAGACAGGATAAGGTTGGGTTTAGCAGTGTTTGGATCCAGAACCACAGGAGTGTAGGAGACcatgtccttcatcttgttccagatgttgaagctcaggttgcccaggtgtttggcctcgtctatcagagctcctgagagcagctgtggatcatccagcagggggcgctgctggactctttccactgcagccttgtagttgatcaggaatgagacgtcttcagctctcagctgctcctctgtggctctgactgtgtctgaaagagctgctatctctctgctcagagcctccatcttcttcttcatcctctgactcttctgctcctcttccttccACAGAGCAGCCatcctggcctcctcttcctcttctagaatctggtgaagcttcttaaactgatccttaatctgtgtctctgtgcgttgGGCCTGGACTTTCATGTGTTTTGCTGTTTGATCAAACTTCACTCTAACTTGTTCAAAAACATTTATCTTCTCCTTTAAGGGCTCCAGAGTTTCCTGAAGCTCCTTCCTGTGTTGTCGTGCAGCTTCATCGATGGGTCTGATTCTGTGGTTggagtgtgtttctgaatgCAGACAGATGAGacacactggctgctgatggtccagacagaagagtttgagtttctcagagtgcagactgcagagagcctctgaagctctctgatctctctccaGTAAGAAGGCCTCACACAGGTTCTTCAACACCAGGTTACAAGGCGGTTCATACAAAGATCTTTTCTTACAAACTGGACACTCCTGTGTTGGTTTCTCTGTCCACCAGCTCTGCAGACAGTctttacagaagctgtggctacatGACAGAAGAACAGGATCTCTAAAGACATCATGACAAACCGGACAGCAGAGATCCTCCTCTGATCTGGAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60340 lncRNA upstream 104609 41381222 ~ 41387063 (+) True G45095
TU59913 lncRNA upstream 185552 41305908 ~ 41306120 (+) True G44758
TU59911 lncRNA upstream 185891 41304778 ~ 41305781 (+) False G44757
TU59912 lncRNA upstream 185891 41304778 ~ 41305781 (+) True G44757
TU59905 lncRNA upstream 414540 41045844 ~ 41077132 (+) False G44751
TU60444 lncRNA downstream 201543 41702634 ~ 41703077 (+) True G45174
TU60456 lncRNA downstream 257612 41758703 ~ 41763651 (+) False LOC120557139
TU60474 lncRNA downstream 354569 41855660 ~ 41858286 (+) True G45193
TU60469 lncRNA downstream 411073 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA downstream 411073 41912164 ~ 41915303 (+) False G45190
XM_039797165.1 mRNA upstream 79051 41406543 ~ 41412621 (+) True LOC120557132
XM_039796702.1 mRNA upstream 126658 41362503 ~ 41365014 (+) True LOC120556884
XM_039797163.1 mRNA upstream 131318 41358141 ~ 41360354 (+) True LOC120557130
XM_039797514.1 mRNA upstream 501752 40961708 ~ 40989920 (+) True LOC120557311
XM_039796466.1 mRNA downstream 124116 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA downstream 124735 41625826 ~ 41628189 (+) True LOC120556749
XM_039797171.1 mRNA downstream 238234 41739325 ~ 41743157 (+) True LOC120557138
XM_039797172.1 mRNA downstream 249959 41751050 ~ 41768313 (+) True LOC120557139
XM_039796472.1 mRNA downstream 395904 41896995 ~ 41902631 (+) True dynlrb1
XR_005638994.1 other upstream 824166 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 950441 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 985102 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 985616 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 1328062 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 249912 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 368639 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 395931 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 404438 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 404516 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile