RNA id: XM_039797172.1


Basic Information

Item Value
RNA id XM_039797172.1
length 722
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC120557139
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41751003 ~ 41768313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttcccatttctCGCCCTCCAGCTCTGCAATGTGAAAGAGACGCCCCAGCACACGGAGGAAGAAGTCGGGGCCTTCACCAAACTCATTGAGGCCATGGGCTTCACCGGACCTCTCAAATACAACAAATGGAAAATCAAGATTGCTGCCTTGCGCATGTACACATGCTGCGTGGAGAGAGTCAATTATGACGAGTTCTTTGACAaGTGCTCCCTCCCTGACACACTCAACTCTTGGTTCTTGGTAGCACAGCTACATGTGTGGATGTGTTTGGTGCGGATGCGTCAGGAGGGCCGAGAAGGGAAGTACATGTGTCGTTACATCGTCCACTCCATGTGGGAGGATGTGGAGCAGAGGAGCAAAATTATGgggATTGATGCCAgccataggaaggaaggaatgaaagCCATGACGGAGACGCGTTTTGCCGTAGCGATATTTGGATACGGTAGGggaatCCTGTCTGACGACTGCGTGCTGGCAGCAGCTCTGTGGAGAAACCTGTTCAATTGCCAGTGTGATGACCCCAAACAGCTGGAGCTCATGGTGGAATACGTACGCAAACAGATGCAGTTCATCGACGCCCTGGACGGGAAGGACCTGATGCTGACCGGCGAGGTCAAGTTGCGCCCGGTGGAGGAGAACGCGCAGAGCATCCTGAAGGTGGCGACGCCACAACGACAACCGTTTGAGATCAGTGTTCCACCACCTTCATTTGAATGA

Function

GO: NA

KEGG:

id description
K17662 CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60444 lncRNA upstream 47973 41702634 ~ 41703077 (+) True G45174
TU60381 lncRNA upstream 249959 41491672 ~ 41501091 (+) True G45119
TU60379 lncRNA upstream 257416 41487332 ~ 41493634 (+) False G45119
TU60340 lncRNA upstream 363987 41381222 ~ 41387063 (+) True G45095
TU59913 lncRNA upstream 444930 41305908 ~ 41306120 (+) True G44758
TU60474 lncRNA downstream 87347 41855660 ~ 41858286 (+) True G45193
TU60469 lncRNA downstream 143851 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA downstream 143851 41912164 ~ 41915303 (+) False G45190
TU60471 lncRNA downstream 143851 41912164 ~ 41915303 (+) True G45190
XR_005638887.1 lncRNA downstream 170901 41939214 ~ 41955671 (+) False LOC120556755
XM_039797171.1 mRNA upstream 7893 41739325 ~ 41743157 (+) True LOC120557138
XM_039796466.1 mRNA upstream 122861 41625207 ~ 41628189 (+) False LOC120556749
XM_039796467.1 mRNA upstream 122861 41625826 ~ 41628189 (+) True LOC120556749
XM_039797165.1 mRNA upstream 338429 41406543 ~ 41412621 (+) True LOC120557132
XM_039796702.1 mRNA upstream 386036 41362503 ~ 41365014 (+) True LOC120556884
XM_039796472.1 mRNA downstream 128682 41896995 ~ 41902631 (+) True dynlrb1
XM_039796471.1 mRNA downstream 137285 41905598 ~ 41912117 (+) False map1lc3a
XM_039796463.1 mRNA downstream 189980 41958293 ~ 41961170 (+) True LOC120556746
XM_039796451.1 mRNA downstream 195051 41963364 ~ 41987577 (+) True LOC120556737
XM_039796453.1 mRNA downstream 223094 41991407 ~ 41998401 (+) True LOC120556739
XR_005638994.1 other upstream 1083544 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 1209819 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 1244480 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 1244994 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 1587440 40156208 ~ 40163610 (+) False LOC120557666
TU60464 other downstream 101417 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 128709 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 137216 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 137294 41905607 ~ 41912086 (+) False map1lc3a
TU60535 other downstream 509972 42278285 ~ 42301895 (+) True G45237

Expression Profile