RNA id: TU60467


Basic Information

Item Value
RNA id TU60467
length 517
RNA type TUCP
GC content 0.54
exon number 4
gene id map1lc3a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41905529 ~ 41912117 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGGAGCTGTTTGGCTTCAGACTGAAAAACCAGAGGCGGCCGAAGACGTTCAAACAGACAAAACCCCTTCCAGTTTCTTTGTCACCGAGTCGCGTTGTTACGCAGTTATACTGCACATTCATTAGGttgtaactgtgtaataactCTGACAGAGATGCCGTCCGACAGACCCTTCAAACAAAGGAGGACATTTGCCGACCGGTGCAAAGAGGTCCAGCAGATCCGCGATCAGCACCCCAACAAGATCCCCGTGATCATCGAGAGATATAAGGGAGAAAAGCAGCTGCCTGTTCTGGACAAAACCAAGTTCCTGGTTCCTGACCACGTCAACATGAGCGAGCTGGTCAAGATCATCAgGCGTCGGCTGCAGCTGAACCCGACGCAGGCCTTCTTCCTGCTGGTCAACCAGCACAGCATGGTGTCCGTGTCCACGCCCATCTCTGAGATCTACGAGCAGGAGAGGGACGAGGACGGCTTCCTCTACATGGTCTACGCCTCGCAGGAGACCTTCGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60474 lncRNA upstream 47321 41855660 ~ 41858286 (+) True G45193
TU60456 lncRNA upstream 141956 41758703 ~ 41763651 (+) False LOC120557139
TU60444 lncRNA upstream 202530 41702634 ~ 41703077 (+) True G45174
TU60381 lncRNA upstream 404516 41491672 ~ 41501091 (+) True G45119
TU60379 lncRNA upstream 411973 41487332 ~ 41493634 (+) False G45119
TU60469 lncRNA downstream 78 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA downstream 78 41912164 ~ 41915303 (+) False G45190
TU60471 lncRNA downstream 78 41912164 ~ 41915303 (+) True G45190
XR_005638887.1 lncRNA downstream 27128 41939214 ~ 41955671 (+) False LOC120556755
TU60491 lncRNA downstream 27157 41939243 ~ 41957098 (+) True LOC120556755
XM_039796472.1 mRNA upstream 2976 41896995 ~ 41902631 (+) True dynlrb1
XM_039797172.1 mRNA upstream 137294 41751050 ~ 41768313 (+) True LOC120557139
XM_039797171.1 mRNA upstream 162450 41739325 ~ 41743157 (+) True LOC120557138
XM_039796466.1 mRNA upstream 277418 41625207 ~ 41628189 (+) False LOC120556749
XM_039796463.1 mRNA downstream 46207 41958293 ~ 41961170 (+) True LOC120556746
XM_039796451.1 mRNA downstream 51278 41963364 ~ 41987577 (+) True LOC120556737
XM_039796453.1 mRNA downstream 79321 41991407 ~ 41998401 (+) True LOC120556739
XM_039796452.1 mRNA downstream 96366 42008452 ~ 42012332 (+) True LOC120556738
XM_039796458.1 mRNA downstream 100862 42012948 ~ 42014554 (+) True LOC120556744
TU60460 other upstream 2989 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 25240 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 141956 41751003 ~ 41763651 (+) False LOC120557139
XR_005638994.1 other upstream 1238101 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 1364376 40519942 ~ 40541231 (+) False LOC120557674
TU60535 other downstream 366199 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1598260 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1926298 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 2044741 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2448700 44360786 ~ 44361368 (+) False G45635

Expression Profile