RNA id: TU60470


Basic Information

Item Value
RNA id TU60470
length 2689
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G45190
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41912164 ~ 41915303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGAGGGGAAAAGAGGCCACTGGGTGTCAAAACCGACCCCAAACTACAAAAAAACCCCGCCACGATCCGCTCAGCTTTGTTGCACGTAGTCATGTGACAagatgcctctctctctctctctctctctctctctctctctctctctctctctctccatcataGTCGAGCATCCTCGTCATATTGGTCAGTACAAAACTAGCTACAAAAAGCCAGAGGACgtccccgtgtgtgtgtgtgtgtgtctgtgtgtctttcctGCCCTCAGTTAGAAGTCCGACTCATAACATGTGATAGTCTAGTTGggattttgtctctttttgttccCACGGGCTTTTATTATTGGGACAAACAAAGCGACGACGTTGGGAGTTTGAAAAATCGGGCGAGCAAAAATAGATAATTTTTTCATTCAACCTCGACACTAAACGTACATACAGAGTTCAACTTGAAAGAAAAGTCGCATTGGGACGCGAGTCTGAGTAGAGGATGTATGAAGTCGAGTTCCGACCCTCGGATACGTTCACGTCACGCAGGTGAACGCACGGCGGAGAGTTAacgttacaccagcaatctgccGCAGCAGTTTCTATTCTCGTCTACAGGCTAGAAGATAAGATGAGCTAGGTAGTGATTGTTAccttctttttgtgtttttttttaaatggtcttttgtttgagatgtttagtttaggtttagtttagtttgtgtTCTGCAGCTTGTTCCGAGTTCACTTTTCGATGATTTTTTAATCGTCCGTTTACCGTCAGCCTGAAGCTCAACTCGCCACTGGCTACCGGGTAGCTGACCATCGGGCTAAAAATGACTGTAAATGCTCTGTAATAATTAACAGCGTTCAGTCGTTTCACACGTGCAATATTTCTCCCGTCACGCCTCGCACCGCCGTCGCAGGTTtccacacttttaaaaaaaacactaaaagtaGACACTGCAGCTGTAACGTAACGCACCGCTCGGTCACAGAAGGgaagttagcattagcatcacGAACCACAACGCGCCGCTGCTACGTGCCACTAGGCAGGTAAACAGCCGCGATGACtggactgtctgtctgtcccgtTAAGCACAAAACGCCGGTAGTATCGCTACTCGCCTGTAGCGTCACTACTACTCGCCTGTAGCGTCACTGCTACTCGCCTGTAGCGTCACTGCTACTCGCCTGTAGCGTCACTGCTACTCGCCTGTAGCGTCACTACTACTCGCCTGTAGCGTCACTACTACTCGCCTGTAGCATCACTACTCGCCTGTAGCGTCACTACTACTCGCCTGTAGCATCACTACTCGCCTGTAGCATCACTACTCGCCTGTAGCATCACTACTCGCCTGTCTCCCCCACATTTAACCGCACGTCCACGTAATTTAAGTCAGGTGCAGCAGATTTAAGTTTAGGTCGCAGAAACCCGAGACGTGCACACTGTTCCAACAGTCGTACAGTTAAAGACTCGAGGGGgagttagggctgcaactaacggttATTCTCTGGATGAATGGACGAGTTGTTTGGgctcaaaaatgtcagaaaatgtttcTCAACAGTCCCGagacgacgtcctcaaatgtctcggttttgttccacaactcaaagatattcagttcactgtcccagaggagagaagacactagaacatattcacatttaacaaagcTGACATCATTTtatcgttaaaaaaaatgactcaaaccgattgtccgaatagttggcgattcatttaacagttgacaactaatcgctGAATCTCTTCAGCTCTACACAGGAGTTATGTTTTTAAACACAACATGGAGGATGTGAGAATTATTAGGAAGACGATCTAGCTTGGAACTGAAACCGTCAGTTTGGGTTAGCAGCACAGGAGGAGGGGGACACCGAAATAAAATAGTTACAAAGCTAAAAAGGTTGAAAATCCTTTCCCCCGTCTTCTTCCGTTCTCACGTGTCACGGTAGCATTAGACAAaaatcaaatgtatttaatGTCTGAAACGAATGAGCTTCTTTTGCACATAAATTAATACAAATATGAAAGAGTTGGCATAGGATTTTTTTAGGAATTACTGTATCTATATATAAcaattttctcttctttttttgtatctgCTCCTGTTCTCTAgagcgctgctgctgctctgtgtctgcctttgttttaataaaacttTAAGATTGTGATGCCCTGCAAACCTTGCATGTTttagcttttttgttttttcttctttcttttttttaatatgtatatTGATTTTATGCAGTAGTtataattgtattgtttaatttagaGAAACATGGAGTCTTTTTAGATGTTTTTCCCAAAaccaaaaactgaaaatatgtgtatgtttgaaacaaaaaaaactaaaacaaaaaaatgtgtgcGTATAAACGATCATATATTCAAACtgtattacattttctttttggcATTTCTGACGTTGACAGTGTTCGGaggggtgtgtgtatatatagatgCATTGCTGCAAACTTATTCAAAGCATTtgccaataaataaataaaaagttgcctttaaaatgtgtgtgtgtgtgtgcgctcattCTATGTTCATGTACATTTCCTGCTTTGTTTAATGAGGTCTAGTATTAAGAGCTGACTGCGGTCAAGCTAACCGTATATCCCATCTCCGTGGTTAAACCAGCTCccttcatctaaatactttgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60474 lncRNA upstream 53878 41855660 ~ 41858286 (+) True G45193
TU60456 lncRNA upstream 148513 41758703 ~ 41763651 (+) False LOC120557139
TU60444 lncRNA upstream 209087 41702634 ~ 41703077 (+) True G45174
TU60381 lncRNA upstream 411073 41491672 ~ 41501091 (+) True G45119
TU60379 lncRNA upstream 418530 41487332 ~ 41493634 (+) False G45119
XR_005638887.1 lncRNA downstream 23911 41939214 ~ 41955671 (+) False LOC120556755
TU60491 lncRNA downstream 23940 41939243 ~ 41957098 (+) True LOC120556755
TU60527 lncRNA downstream 252574 42167877 ~ 42170069 (+) True G45229
TU60542 lncRNA downstream 362982 42278285 ~ 42288948 (+) False G45237
TU60552 lncRNA downstream 433951 42349254 ~ 42350755 (+) True G45245
XM_039796471.1 mRNA upstream 47 41905598 ~ 41912117 (+) False map1lc3a
XM_039796472.1 mRNA upstream 9533 41896995 ~ 41902631 (+) True dynlrb1
XM_039797172.1 mRNA upstream 143851 41751050 ~ 41768313 (+) True LOC120557139
XM_039797171.1 mRNA upstream 169007 41739325 ~ 41743157 (+) True LOC120557138
XM_039796467.1 mRNA upstream 283975 41625826 ~ 41628189 (+) True LOC120556749
XM_039796463.1 mRNA downstream 42990 41958293 ~ 41961170 (+) True LOC120556746
XM_039796451.1 mRNA downstream 48061 41963364 ~ 41987577 (+) True LOC120556737
XM_039796453.1 mRNA downstream 76104 41991407 ~ 41998401 (+) True LOC120556739
XM_039796452.1 mRNA downstream 93149 42008452 ~ 42012332 (+) True LOC120556738
XM_039796458.1 mRNA downstream 97645 42012948 ~ 42014554 (+) True LOC120556744
TU60468 other upstream 78 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 78 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 9546 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 31797 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 148513 41751003 ~ 41763651 (+) False LOC120557139
TU60535 other downstream 362982 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1595043 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1923081 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 2041524 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2445483 44360786 ~ 44361368 (+) False G45635

Expression Profile