RNA id: XR_005638887.1


Basic Information

Item Value
RNA id XR_005638887.1
length 783
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120556755
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41939214 ~ 41957098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTATCTCTTTTATAAACGATCTTTGGAGTCAGCCGCTCCACCGACACGTCTGCTGGGATACTCTGCCTGGAAACACCGCAAACTAATCGGAACCGGCGGCCGACAGAGACGGACGGGTCTCGTAGGATACGAGGGGGTCGATTAGGTGTGACAGTGATGATGGGAGGAGAGCAGAGCCATGAAAGAGAGgctgaggagagagaaaaagagactgaaAAACATCAAGAGTCTGCCAATACTGACAGCTCCggatctgctgctgctgaagAAACCCCAGGAGAGCTGCCCCAGTGCCAGATGGGAAACAGGAAGGTGGACAACATGTGCTTCATGATCTCGTGCACCAACTGGTACTAAAGGGATCCTCGTACAACAGGTTGATGAAACAGAAGATGTTGATGGGACGTCTTGGCCAGACGCTGCATTCATGGAGCCAACGAAAATCCAAAACCAGGCTGTCACTGAAGTCCCATGTGATCAGCGCATTGTTTCGCCATTTTATAGGTCAAAACAAACAGCATATAACATATGTTAGAGGTGGTTGTTGGTAGATTTTGATCACATTAGGTCAGAGTCAGGATAGCTGTGTTCCCCGGTTTTcactctttatgctaagctaagctgacTCGATGCTGGCGGTGGCAtcatatttaccgtacagacGAGACTGTAATGAAACTTCTCAtgtaactcttggcaagaaagcaaataagtgcaTAAGTTCAGCCAAATCAATCATTTTCACAGCAATGACTTAAATAAAGAcgtttgatttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60469 lncRNA upstream 23911 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA upstream 23911 41912164 ~ 41915303 (+) False G45190
TU60471 lncRNA upstream 23911 41912164 ~ 41915303 (+) True G45190
TU60474 lncRNA upstream 80928 41855660 ~ 41858286 (+) True G45193
TU60456 lncRNA upstream 175563 41758703 ~ 41763651 (+) False LOC120557139
TU60527 lncRNA downstream 212206 42167877 ~ 42170069 (+) True G45229
TU60542 lncRNA downstream 322614 42278285 ~ 42288948 (+) False G45237
TU60552 lncRNA downstream 393583 42349254 ~ 42350755 (+) True G45245
TU60554 lncRNA downstream 456534 42412205 ~ 42412427 (+) True G45247
TU60555 lncRNA downstream 465937 42421608 ~ 42429476 (+) True G45248
XM_039796471.1 mRNA upstream 27097 41905598 ~ 41912117 (+) False map1lc3a
XM_039796472.1 mRNA upstream 36583 41896995 ~ 41902631 (+) True dynlrb1
XM_039797172.1 mRNA upstream 170901 41751050 ~ 41768313 (+) True LOC120557139
XM_039797171.1 mRNA upstream 196057 41739325 ~ 41743157 (+) True LOC120557138
XM_039796467.1 mRNA upstream 311025 41625826 ~ 41628189 (+) True LOC120556749
XM_039796463.1 mRNA downstream 2622 41958293 ~ 41961170 (+) True LOC120556746
XM_039796451.1 mRNA downstream 7693 41963364 ~ 41987577 (+) True LOC120556737
XM_039796453.1 mRNA downstream 35736 41991407 ~ 41998401 (+) True LOC120556739
XM_039796452.1 mRNA downstream 52781 42008452 ~ 42012332 (+) True LOC120556738
XM_039796458.1 mRNA downstream 57277 42012948 ~ 42014554 (+) True LOC120556744
TU60468 other upstream 27128 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 27128 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 36596 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 58847 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 175563 41751003 ~ 41763651 (+) False LOC120557139
TU60535 other downstream 322614 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1554675 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1882713 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 2001156 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2405115 44360786 ~ 44361368 (+) False G45635

Expression Profile