RNA id: TU60527


Basic Information

Item Value
RNA id TU60527
length 2173
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G45229
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 42167877 ~ 42170069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGTTCAACTTCTTTTATTAAATCCTATTAAAGTGTTACAAATTAAGACCTTTTAAACACAGAACGTTCACATTATCCAGTCGATAACacattgtaaaaaacaaaactttaaagAAAGGTTTCTTTAATAACCCATATTCCTGACAGTCCATTCATTTTACTATGTACAAAGTAATATACATAAACCCAAATTCCTGACAGTACGTTCATGTATTATGTACAACGTAATATACATTagtcagacaaacatgcaacaaGGATTGAAGCCATGTGTGCAAATTATCCGGCTGATTgtaaagacaaaacacacaaaatcacGTATATTAAAATAATAGTTCACTGTGAATCGTTATTGCTTATCTGAATCTGAACAGTAGAAATCAGTTTCGATGGCTGCTGCTCCACGCTGAGGAGGAAGGATTTGAAATCTTTCCGCACAACCCAAAAtataacaaagaaaacaaacaaaaaatacaataataactTGTTTTAACTAACAGACTATATACAAATCTACATAGGGGAAAAgaatgccatttaaaaaaaaagtacaatataagGAATCAATCCTCTTATGAAGAAACGTATTTCATGGGCACGATAGCACGGTCAAATTTTAATTCTTTCAACAGACATACCCAGAACTGTCTTGTTTCTCTCATCTGCTGTTGAACCACATGGTTGCGTCTGAAATCCCCTCCTCTGAACTACGTACTCAACACGTAAACTATCGCTCAACAtacttttgtgtaaataaacagtagtgtCTTTTAGTTTGCACGTACAGCATGTGTGTACACACGGGAGAATATATTGGAGGCACGTTCGTGAGTCTGCCCTCTCATTGGCTACCGCTCTCCCAAAGTGCCGCCAACATCCGGGCACTTTCGCAGATTTTGCTCGCACCGCTGTTCTCATAGAGAATCAACTGAATCGCTCCGCTCTGCCGTTATTTCAGCTGCCTGTGGAAACCCAGCGTAATGAGATACAGCACCTGCTTCTTCCTCTTCTATCTACAATGGCTCCGTTCCCTGTAGTAGGGGCAGCAGTTTCAGATATTAACACTTATTTAAAGTCACTGGAGATGTTAAGGTTTGTCTGTGATGCGATtgttaaaggggcgctatgcagtttttgacatttttcgtTCGTTCTTTTTTTGCTTTTTGCTAAccggtttctctatagagccccccctacagctTGTATGTAACTTGTATCTTAcatacccggctcacagtcacctgtaTCTTATTATATCCTCTCTCGTTAAGTCTGcagtttcctctttctttgttcctccgacaatgctttcctagctttcggcttcttttttgccggctcagccatgacgaaaaactccatcgctaccttgttagccggttcctgaatggcgGCGTGTATGTGTTCAGTGCCGTGAAGCTATtagttacatcgcgagacctgatatcacgccatacgtcctgacgctgaggccggcagcttgttgcaagggtggtttcttccgctcacaggcgctagggggaagtgAGACAACCTCCATTAAACCCCAAAAAGtgatataaccattccaatgactccaaagctgttcagttaaggtaaattaagcttaaaaaaaaactgcatagctCCCCTTTAACCTTAAGGCAGGATGATCAAGGCACGTGGTACacactataatataatataatataatataatacaatacactACAATCAAGGAGAGTCAAAGCAAAGCCAAAtgttagaaacaaaaaaaaggaggaagttTTCTTTACAATCATGGCTGCATTAAATCACTGTCTTTACACATATTAAGATTCCTCCTGATACTCTGTAGTTTTTCAATGTACTTGTTTGGTAAAATTGTAAttggttttattctttttttttctgcggTGATAGTTACCAACATTACACAGAATTTTTTTGGGTTTCGCTGACTTTAcatatacagtttattaaaacataaaacaactttTCTAAGCTCTGGAAAAAGttttacaaatataaaaaacaccCAGGAGTAAAACTTCTCAatttacctttttttgtttttctgttttaaggccctgacacaccaacccgagggccgaccgtcggcaggaAAGCCAGCGGGACTGATGGCTCCGAGTTGGttcaaaaagttcctcagaacacaccgaagaggcG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60491 lncRNA upstream 210779 41939243 ~ 41957098 (+) True LOC120556755
XR_005638887.1 lncRNA upstream 212206 41939214 ~ 41955671 (+) False LOC120556755
TU60469 lncRNA upstream 252574 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA upstream 252574 41912164 ~ 41915303 (+) False G45190
TU60471 lncRNA upstream 252574 41912164 ~ 41915303 (+) True G45190
TU60542 lncRNA downstream 108216 42278285 ~ 42288948 (+) False G45237
TU60552 lncRNA downstream 179185 42349254 ~ 42350755 (+) True G45245
TU60554 lncRNA downstream 242136 42412205 ~ 42412427 (+) True G45247
TU60555 lncRNA downstream 251539 42421608 ~ 42429476 (+) True G45248
TU60570 lncRNA downstream 298166 42468235 ~ 42479826 (+) True G45253
XM_039796458.1 mRNA upstream 153323 42012948 ~ 42014554 (+) True LOC120556744
XM_039796452.1 mRNA upstream 155545 42008452 ~ 42012332 (+) True LOC120556738
XM_039796453.1 mRNA upstream 169476 41991407 ~ 41998401 (+) True LOC120556739
XM_039796451.1 mRNA upstream 180300 41963364 ~ 41987577 (+) True LOC120556737
XM_039796463.1 mRNA upstream 206707 41958293 ~ 41961170 (+) True LOC120556746
XM_039797008.1 mRNA downstream 323004 42493073 ~ 42518058 (+) True sdc4
XM_039797009.1 mRNA downstream 323004 42493073 ~ 42518058 (+) False sdc4
XM_039797010.1 mRNA downstream 374006 42544075 ~ 42556438 (+) True LOC120557014
XM_039797174.1 mRNA downstream 429018 42599087 ~ 42601293 (+) True LOC120557143
XM_039797175.1 mRNA downstream 432446 42602515 ~ 42615582 (+) True LOC120557144
TU60468 other upstream 255791 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 255791 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 265259 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 287510 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 404226 41751003 ~ 41763651 (+) False LOC120557139
TU60535 other downstream 108216 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1340277 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1668315 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 1786758 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2190717 44360786 ~ 44361368 (+) False G45635

Expression Profile