RNA id: TU60555


Basic Information

Item Value
RNA id TU60555
length 2194
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G45248
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 42421608 ~ 42429476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGTTAGCTTCTTCTGTTGCGTTCTCCTTTACCTCTTTCAGtaaagctagCCCTGCCCAGGTGTGTTTAATCTATCCCTCGTTACTACCCTCCTTTCGTTACTCCACCCTCACCTGACTCACTcgaaacagaaaaacagacttCAGCTCAGCTTCACCCTCAGACCAAACTAACAACTACCTCTGAGTGAGTTCAGCTACAGGAGAGAAAAGTGGAAAACTACAACACTGCTGCTTCAACCTGCTGACACTCCACACACTGAAGAGACAAAATGGCTTCCAGATCACAGGAGGATCTCTGCTGTCCGGTCTGTCATGATGTCTTTAAAAATCCTGTTGTTCTGACatgtagccacagcttctgtaaagACTGTCTGCAGCGCTGGTGGAGACAGAAACAAGCTCAAGGGTGTCCAGTCTGAAGACAtctcattcctgatcaactacaaggctgcagtggaaagagtccagcaaggccccctgctggatgatccacagctgctcccaggagctctgatagacgaggccaaacacctgggcaaccttaacttcaacatctggaacaagatgaaggacatgGTCTCCTACACTCCTGTGGTACCATCAGCTCCACGCACTGATCTCGTAGTGCAGAAGAAGCTCCAGAGGATcagagtgactctggactggaacagaggaaagctgtcgttctctgatgctgatactgacacacacatacacaccttcgcacacactttcactgagaaaATGTTTCTATTCATTAACACTTGGGATAAAGTCCCACTGAAGATATTaccagtgaatgtgtgtgtgacaggggAGCAGAGCAGTTAGAGATAAAGAGGATGATTATATTCatgatggtgtttttttttaaagagaaaagtCTCTGAATTTAACCTCTTAATCTGCACCTGTCCTCCTGCTGTCTCATTATTAGAAAGATATGTTCTTTCacttattgttttcattttatttagtttgaaaGTTAGCTTTTGTTATGTTAAATTATTTCACTTCTTTTCTGATCATTTTGGTTCGTTTAGCCTTTTTCTGTTTTACCAATACTGTTGATTTAAATTgttgttcatgttttattattttgtgtgtgtggagccaTGACGACCAGCAAACACTTTGTAGAAGCTGATTTGATccaaagaaggaaaaaagaacCAAACATTGTTCAGATCCAATAAACTAGAAAGTTTCCAAACATTTAAATCAATGTTTGAATACATGTATTATTTAAAAGTTATACATATGAAATTATGCAAGATATATGAACCATTTTCTGTTTGATTCTTTCTGTAAAAGTGTTCAGTCTGCGGTTGAATTCTGCTGTTAGTCATTCAGTCAGAGGAGGAGTTGTTCTATTAAGGTGGATGTCTCCGTTTGGCTTCAGACTTTATGTAATGTTGGTGATTTAAGAACTGAATCTTGCTCTTCTATAACAAATCAGAAAGTGAAACTCTACattgaaaagagacagaaattgtcataaataaatagcaataaaaacaatgaaaaatgttCCAAAACCTCAATAACTCTTTACATGCATTTGAGTTTTATCATTTTTTgaaggctgatgggaatgttatTGTGTTTGAATGTGAAGTTTGGGTCTCATACATCATGTAAAAGTTATTGTTTCATTGTGAAATGGTGGAGGGATATTTCAGCGAtcataatgtatttttattttttttttaatagaattGTTGCAGAATTAgaaattttttggggggggcattttagcctttacagtttttccaattgctaacacactaaaatgacatgcatagcataattatttaaactgacacacagagatgtgctttacacacattttgcaattcaaaatggAACTTCTGAAATGCTCTGAACACtgttctctgcataagacacaacaatctgacataaagtcacatgtttgccatttcaaaacacaGCCATTCAAAAATAACTCTACGTGAGCTAATTAGCCTATATATGTGCCACTTGGCCAAACACCCCAATGGTTAATTGTTACCACTTtaatcaggaagtaagcactatgatgcctcttttttttctatatattgtttctgcacattttcttctgcaattttctttttcagtttactgttttttttttagcatatttttgtttggtccaatgtaaatatatctgctgtacatatgttgcac

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60554 lncRNA upstream 9181 42412205 ~ 42412427 (+) True G45247
TU60552 lncRNA upstream 70853 42349254 ~ 42350755 (+) True G45245
TU60542 lncRNA upstream 132660 42278285 ~ 42288948 (+) False G45237
TU60527 lncRNA upstream 251539 42167877 ~ 42170069 (+) True G45229
TU60491 lncRNA upstream 464510 41939243 ~ 41957098 (+) True LOC120556755
TU60570 lncRNA downstream 38759 42468235 ~ 42479826 (+) True G45253
TU60572 lncRNA downstream 39454 42468930 ~ 42483232 (+) True G45254
TU60586 lncRNA downstream 149988 42579464 ~ 42580273 (+) True G45265
TU60596 lncRNA downstream 199092 42628568 ~ 42641102 (+) True G45270
TU60597 lncRNA downstream 212327 42641803 ~ 42644002 (+) True G45271
XM_039796458.1 mRNA upstream 407054 42012948 ~ 42014554 (+) True LOC120556744
XM_039796452.1 mRNA upstream 409276 42008452 ~ 42012332 (+) True LOC120556738
XM_039796453.1 mRNA upstream 423207 41991407 ~ 41998401 (+) True LOC120556739
XM_039796451.1 mRNA upstream 434031 41963364 ~ 41987577 (+) True LOC120556737
XM_039796463.1 mRNA upstream 460438 41958293 ~ 41961170 (+) True LOC120556746
XM_039797008.1 mRNA downstream 63597 42493073 ~ 42518058 (+) True sdc4
XM_039797009.1 mRNA downstream 63597 42493073 ~ 42518058 (+) False sdc4
XM_039797010.1 mRNA downstream 114599 42544075 ~ 42556438 (+) True LOC120557014
XM_039797174.1 mRNA downstream 169611 42599087 ~ 42601293 (+) True LOC120557143
XM_039797175.1 mRNA downstream 173039 42602515 ~ 42615582 (+) True LOC120557144
TU60535 other upstream 119713 42278285 ~ 42301895 (+) True G45237
TU60468 other upstream 509522 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 509522 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 518990 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 541241 41869730 ~ 41880367 (+) True G45186
XR_005639071.1 other downstream 1080870 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1408908 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 1527351 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 1931310 44360786 ~ 44361368 (+) False G45635
TU61117 other downstream 1974427 44403903 ~ 44407449 (+) True G45647

Expression Profile