RNA id: TCONS_00007170


Basic Information

Item Value
RNA id TCONS_00007170
length 3413
RNA type mRNA
GC content 0.44
exon number 24
gene id XLOC_003702
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42600731 ~ 42635440 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTCCGCTAATCAGCAAGCGGGAGGAGGCGGGACTTCCGCGTTTGTGGGCGGATCCGGGTGGGTGTTGATTTGTCAGGAATAAAGCGAACATCAACATTAAAAACAGTCGTCAATTTATAACATATTAATCATTTAAACGATCGCATAGTTCGCGTTTGACCTGCAGCCATGCCTGGAATCGATAAACTACCGATAGAGGAAACTCTGGAGGACAGTCCGCAGACTCGTTCTCTGCTGGGTGTGTTTGAAGAAGATGCAGCAGCGATTTCCAGTTATTTCAATCAGCTTTTCAAAGCCATGCAGAGGATCTACGACGCCCAGAATGAACTGAGCGCTGCCACACATCTGACATCGAAACTACTGAAAGACTACGAGAAGCAGCGTTTTCCTTTAGGTGGCGACGACGAGGTGATGAGCTCCACTTTGCAGCAGTTTGCTAAAGTTATCGACGAGctcAGCTCCTGTCACGCGGTTCTCTCCACGCAACTCGCAGATGCCATGATGTTCCCCATCACACAGTTTCAGGAGAGAGACCTGAGAGAAATTCTCATCCTGAAGGAAGTGTTTCAGCTCGCAAGTGATGATCACGATGCTGCCGTACACAGATACAGTCGTCTGTCGAAGCGGAAGGAGAAtgagaagGTGAAGAATGAAGTGATGGAGGATGTTTACACGTCCAGAAAGAAGCAGCACGAGACCACAATGCACTACTTTGCGTCTCTCAATATGCTGCAATATAAGAAGAAGATCGCTCTGCTGGAGCCGCTACTGGGATATATGCAGGCGCAGATCAGTTTCTTCAAACTGGGATCTGAGAATCTGACGCAGCAGTGGGAGGATTTCCTTACTAATATTGGCACCAGCGTGCAGAACGTTCGCAGGGAAATGGACAGCGATGCGGAAGCGATGGAGCAGACGATTCAGGACTTGAAAGAAGCCAGTGACCCACTCTACATGCCCGACCCAGACCCCAACAGGATCCCTGTCAACCGCAATCTGACACGCAAAGCCGGATACCTCAACACTCGCAATAAAACGGGCCTGGTGTCGTCCAGCTGGGAGCGTCAGTACTTCTTCACGCAGGGAGGAAACCTGATGAGCCAGAGCAGAGGAGCCGTGGCTGGAGGACTCGTCATGGACATCGACAACTGCTCCGTCATGGCCGTGGACTGTGAGGACCGGCGCTTCTGCTTTCAGATCACTGCCTTCGATGGAAAGAAAGCTGCAGTATTACAGGCGGACAGCAGGAAAGACTGTGAGGAGTGGATTGCAACAATAAACAACATCTCCAAGAGGATATACCTCAGTGAAAACCCAGAGGAGATCGCAGCCAGAGTGAATCAATCCGCACTGGAGGCAGTGACTCCTTCACCGTCTTTCCAGCAGAGACACGAGAGCTTCAGACCAAACACGCAGGGTAAAGTGAAAGCGTCCCGTTCAGGCAGTCAGTGCTCTGTGGGCTCCGAGTCTCCAGCTCTGTCATCTCTGTCTCTGGATTCACTGGTTGCTCCTGATACTCCCATACAATTCGACATCATTTCCCCCGTCAGCGAGGAGCACACAAGTCAGACGAAAAGCAGTGCACAGGGCAGGACAAACCCATTCGGGGAATCTGGAGGATCACAATCTGAAGAAAGTGAAGACTCGATCCTGCATCAGTTGTTCATCGTGCGCTTTCTGGGCTCTATGGAGGTGAAGGCCACAGAGAGCTCAGACGTCATTTATGAGACCATGAGGCAGATCCTGGCCGCTCGAGCCATTCATAACATCTTCAGGATGACCGAATCACACCTGCTGGTCACCTGCGAATGTCTGAAGCTCATTGACCCACAGACGCAAGTCACCAGATTACGGTTTCCGCTCTCCAGTGTGGTTCTGTGTGCGTCGCATCAGGAGAACAAGCGTTTGTTTGGTTTTGTGCTGCAGACAGCAGGAGGACGAGCAGACGGACAGCCTGTTACCGTCTGCTACATCTTTGAGTCAAACAATGATGGAGAGAAGATCTGTGACAGTATAGGCCTGGCCAAGCAGATCGCCCTCCACTCTGAGATGGACCGCAAAGCCTCACAGAAACAGAGAGAGCTGGACAAAGCCAAGGAGAAACAGCAGGAAGAACtccataaacaaaaacaaatcgaGAAGGATCTGGAGGAACAGAGTCGTCTGATTGCCGCCTCTAGTCGACCAAACCAACCAGCAGCTGACGGACAGTTCTTGGTCCTaagcaacagccaatcagaggacaGCGACGTAGGAGAGGAGGGGCTGAAAAAGGATCAAGATATTAGAGAGTGTTTTCCAAGTGAACTCATACCCAGGTATTGATATACGTGAAGAACTTGCGAAGAAGCTTCATTTAGATGAGGACAGAATCCAGatTTGGTTCCAGAACAGAAGAGCAAAGCTGAAGCGTTCGCACAGAGAGTCCCAGTTCCTCATGGTGAAAAACGTCCTCAGCGATTTACAAACCGGCAGAGAAGAACACTGAGAGTAGAACtacatttctttattattattattattattattattattattattatcatcattattatttctcTGTTAccaaattgtaatttattaaatgtctTTATTAGTTATgtctttttatgatttaaatgataaaaatacctattgttattttttattgtgtgtgtttggtcaaaatataaataaataattctaaaacTTATTCTAACGTTTTAAGTGAAATCTTTAAACTTTCCCTGGGTCTGAATGAAGGAAAGTTAACATTATTTTCTGCCAGCTGTTAAGCAAACACATCACCCCCACCTACAAATTAATTAGCGCCTTGTAACGAGTGCTCAGTAAGCCTATTAGGTATTGATTGGGTCACAAAGGGGCTGCACTGAGGGGGGCTTTCATACAGGACAGCATTTGCATTTGAGTCACTTGTTGGATTCCAGCAacatttgcaggtttttttttacatgttatttttcTGACATACTATAATTGTGCCATATGCATATTCTCATCACTACAATTATATGCATATACAATTTTGCATAACTGGAAGCATGATTTTATAGcacattatgtaaaataaaatgatataatattgGCAAATTTGCAAACACTTGATGGCGCTGTTGTTCATTTGTgctctgaaatatttttttaaaacaaagaaatcacaaaatgtaaaaacaaatatttttttgtttattttttgtggatGTTTTGAGGATATGCACATGTTTTGCATATCTGGAAGAATGTTATTTTGTATAatagtatataaaataatataatatatataaatatggccAAATTTGCAAACACTTGGTGGCGCTTTTGAATATGCAAACACATGCACAAGTTATGCATATCTGGAAGATTTTTTAATgcatatgtaaaaaatatatagtataaaataaaattgaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0021983 pituitary gland development biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-990415-130 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within forebrain development. Predicted to be located in early endosome membrane; phagocytic vesicle; and ruffle. Predicted to be active in nucleus. Is expressed in anterior presumptive neural plate; neural keel; neural plate; and telencephalon. Human ortholog(s) of this gene implicated in septooptic dysplasia. Orthologous to human HESX1 (HESX homeobox 1).

Ensembl:

ensembl_id ENSDART00000192028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007166 lncRNA upstream 27749 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 182357 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 468824 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 502440 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008426 lncRNA upstream 531067 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008429 lncRNA downstream 158138 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00008687 lncRNA downstream 204410 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 204414 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00008689 lncRNA downstream 204416 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008690 lncRNA downstream 204426 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00007168 mRNA upstream 1713 42587900 ~ 42599018 (+) True XLOC_003701
TCONS_00007167 mRNA upstream 4683 42585138 ~ 42596048 (+) False XLOC_003701
TCONS_00007165 mRNA upstream 39516 42556395 ~ 42561215 (+) True XLOC_003699
TCONS_00007164 mRNA upstream 97791 42494531 ~ 42502940 (+) True XLOC_003698
TCONS_00007163 mRNA upstream 108071 42482920 ~ 42492660 (+) True XLOC_003697
TCONS_00007174 mRNA downstream 5964 42641404 ~ 42722658 (+) False XLOC_003704
TCONS_00007175 mRNA downstream 6029 42641469 ~ 42719359 (+) True XLOC_003704
TCONS_00007176 mRNA downstream 91272 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007177 mRNA downstream 95199 42730639 ~ 42732440 (+) True XLOC_003706
TCONS_00007178 mRNA downstream 130523 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007149 other upstream 1135495 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1442803 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1442805 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1711437 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 1944860 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007182 other downstream 409386 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1389322 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1689321 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1689321 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1693334 44328774 ~ 44335322 (+) True XLOC_003732

Expression Profile

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