RNA id: TU61348


Basic Information

Item Value
RNA id TU61348
length 2516
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC120557302
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44712415 ~ 44744790 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTGGACAGCGACGCCTCCGTCTCCATCCCATCTGTCGACCACGAGGAGCTGGTGCGCTCCTTCAGCGGCTTCTCCCTCTCCCAGTCCCGAGAGAACCTGGACTTCCTCAACAATGGCTTCTACTCCGCCAGCCGGGGAGGTGGCACCGCCCGTTGCGCCACCGTCCGGCCGTACATTGCAGAGGGTGAGTCGGACTCCGACTCGGAGCTCTGCGCTCCCTCGCCGCACTCTGACCAGGCCTGGACCGGAACCAAGTAGAGCCGAACCAGCACAGCAATTCAAACAACGATCAAAATATGGATTTAAACTAAGAAACTGTTAAAAACTGAAACAGACACTTTAAACACCAGCTGGAGTTACAGAATAAAGCATCATGGGCACTGTAGTCTCACAGACATATCTCCACATCCCTGCAGTATGGTCTGGCCGCCCCGCtcatctattctgggataggggttACACATTCTGGCttgttggtatttctttaaCACAGTGGTTCCTAACCTTTCTGGTCTGAGGTTCCCCAGCAGTCCTGTCAGACAAACTCACGTACCCCTTCGTTCATTCACAATGTTTGTTTCAAATGTTTAACACTATTCGTtatataaaagtggatattgttagcctgggaaaaccctgacgaacttccggcaaattttagatttgctctgcaactccgtctggccaagagcccattcaagcccatttccaatttttccaaatcgaggcaccaatcacaaccgttgacgcgggctttacacgatatGACGATAGCGCATCGACGTTGAATCGTCATCTCCTTCATTGCTCTGATAGGTTTTCGCTCTGCCCAATTGCGCCTGGGGTCAACCAGGCTAGGatattgttcatttttttgtaCAACTGAACTGTCAATATTACGTTTGGTATGGTGAGTATCCTACTACTACAAACCTTCTAGGATACTACTACTTGGAGTGAAGCTAAATGTTTGACCATATATCCATTAACGATTATTTTaactaactatttcaaccatttatccagTACTTATAAATAATCATTCAAACTGTTTAGCTTACTTTTTTACCCTTAATTTCTGGCGTGGAATCACtgatttaaaccaatcacagccatcctgggcggcgctaagtcCCAGATGCACAGACTGCGCCCTTGCAGAATATATAGCGGAGCTAACGGAGGAAGACGCgccagatgtcaggctttatcccaacACTGAGCCAGACCAGAGGAACTATGGACCCCACAAACAACTGGCTCTATCGCTGGTTTTATTCATGAGAAAGTTTTAATGTgacaaatgtttgttttcactATCACTGATTGGTTCACTGCTGGCACACGCTCACACCTGATTGGTTGCTTCTTTCCATgtttaagggttagggttagttattacattacatgtcatttagctgacgcttttatccaaagcaacttacaattgctacatataTGTCCGAGGtaacacgcctctggagcaactagggggtAAGTGTCtcgctcagggacacattggttgatgtatcgcagtgggaatcaaacccagatctcccacaccaaaggtaggtgtcatatccactgcgcagTCACCACCCCACCCAGTTAGGGTTGTAAACACTATTATCAGACACCTCAATGTTGCAGTCGTTTTGAAAAAGCTGAcacaaagcatcatgggaacaACAGACTGTGTTATTTCCTGAGAGTCATCCCGAGCTTTCAGCATAAAATTGTTTATTCTGCCCTCTACAGGCAGAGAGCTGGAACTACAGAAACTGTGACAGAGATACAACTTTGTGATGTCTTTGTAACCGTATTTTGCACGTTTGTGGCTAATATTTTGCAGGTTTATCGGAGTTTCTAGGTTTTAAGGTTTGAAGGAATCTTTCACTTTGAAactttcactattttctggCGTTTTATCAACTATATGATTAATGAAGAAAATAATCACATTATTTGTAGCTGCAGGCCTAAAATATGTCACtgttaattattttaaaatattcattcaTAAATCCCAACGGCTGATTAAATAACCCAGCGACAGGAATGTAAACAATATGTGAAGATCCGTCCAGCAGAGCGAAGAGTTCAACATGTCTGACCAGCAGAGGAGAGCTAAGAGATGTAAATATGAGTGTCATCATCAGACAGTAAATGTTTATTAACTGTCTGTACATCTGATCAATCCGCTATGGATCAATGTGGGATTAGctgttaaatcattttaattcattcattcctcTATCTGCATGtgaacattttatttaccactTACATGGAGACAAAGAAggaaagttgtttttttgtaatttgttttttgaaaaaaaaatgtaatattttgtgaaGGGTTTTCATTTGTCAATCTGACTGTCCacctttaaatgtttaaaccaCCTATAATTGTTTCCATGGTCACCGTCTGTCTGTTCAGATCAAACTGTACGTTTGTGTAGAGATTGCCTGTTTGATTGTATTTCAGTATTAATTAAAAACCTTAAACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61362 lncRNA upstream 27585 44714173 ~ 44714690 (+) True G45831
TU61095 lncRNA upstream 273284 44400478 ~ 44468991 (+) False G45635
TU61094 lncRNA upstream 339100 44400446 ~ 44403175 (+) False G45635
TU61088 lncRNA upstream 339100 44400478 ~ 44403175 (+) True G45635
TU61098 lncRNA upstream 352074 44361162 ~ 44390201 (+) True G45636
TU61402 lncRNA downstream 61920 44806710 ~ 44807403 (+) True G45863
TU61415 lncRNA downstream 78738 44823528 ~ 44824784 (+) True G45873
XR_005638908.1 lncRNA downstream 95272 44840062 ~ 44841232 (+) True LOC120556889
XM_039798363.1 mRNA upstream 33323 44670589 ~ 44708952 (+) True ralgapb
XM_039798362.1 mRNA upstream 33549 44670589 ~ 44708726 (+) False ralgapb
XM_039798366.1 mRNA upstream 33549 44670589 ~ 44708726 (+) False ralgapb
XM_039798368.1 mRNA upstream 33549 44670589 ~ 44708726 (+) False ralgapb
XM_039798367.1 mRNA upstream 33549 44670589 ~ 44708726 (+) False ralgapb
XM_039796848.1 mRNA downstream 27114 44771904 ~ 44803353 (+) True LOC120556948
XM_039796849.1 mRNA downstream 27309 44772099 ~ 44803353 (+) False LOC120556948
XM_039796703.1 mRNA downstream 96526 44841316 ~ 44842831 (+) True LOC120556890
TU61350 other upstream 80 44724807 ~ 44742195 (+) True LOC120557302
TU61241 other upstream 242979 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 247556 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 334826 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 380907 44360786 ~ 44361368 (+) False G45635

Expression Profile