RNA id: TU61350


Basic Information

Item Value
RNA id TU61350
length 6373
RNA type TUCP
GC content 0.47
exon number 9
gene id LOC120557302
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 44712415 ~ 44744790 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctcaaatcatgcataaaaaaaacaaccggAGAAAAGGAATACAAGAAAATGAACTTGTCATAAATTCGACcctttttctctgcttttccttCCTTAGAAGTAGATTTGGtgggaaaaacgtttttttaacTAGCTCTTAAGtgctattttttttactttgttcaTTCAGTGTGGACAATCTAAACatggtgtcagtacccgatccgttccacctgcacaatccgttctgcacatgcgcaagatgttcacacgctagcctccagctaacgttagttagctaatagctaattcggcggaccgctaggtgattatagcggtagctaacggttaattcggcggaccgctaggtgattatagcggtctgccgttagcctcccccgggaaactaacgttagtttagctaacagttaattcggcggaccgctaggtgattatagcggtctgccgttagcctccaccgggaagctaacgttagtttagctaacggttaatttggctaaccgctagctgattgcagcggtctgccgttagcctccacagttaagctaacgttagtttagctaacagctaattcggctaaccgctagctgagacagcatgtaaactttaaaagaccctcaaaataaaacttgaaaataaacgttaacatatataacagctgttacgtcagttctactttacttgtgctcatttaaaatacaatcactcaatacttgtctttattgttattactgtaatgtcttaatttagctgtagcctgcttttcccattatgtttgacttaacgttattttagactgaatggcatgaacgcagcattatcatctgcgcctacgtcatggcatacgtgtcatcttgcacatgcgcagaacggattgtgcaggtggaacggatcgggtactgacacatgGCTTCAGCTCACTATCGTTccgttgtttttttgtccttatttttcttctctctaAAAATCAGTGTAGCAATTTTTCCCACTATGCAGTGCCACCACTGCCACCTACTGGACAAATATGGTGTGCAAAGAAAATATAACTACAAGTAATCAAGAAtacattaatataatattaaactaGAAATAACCTAATCCTGTTTGTAGGCTATTTTCGAGTGGGTTAcagctgtctgcgtgaagttatgagaaactgtaaccacacttgaaaccactttatcggcatcacCGTGagtcactgtgacttcaacaaaactgcagagcccacgtagtttgcatcgtctgcagctctgcgagtgtgtgtgtttgtgtcggagcACCGCTCactgtcagttttcagagaggacagataagcttgcggtTACGCGCTCTCAATTTCAacatttaacgtgtaaaaaaagggggcaaatttactggtcgcacatgtgcgactggatgtaaaattcagtcgcacactctcaaattttggtcgcaaaatgcgaccatttggttgcagtctggagccctgtcaATCCTCTCTGGATTATCAGGAAGCTGCTTATACTCTCCTCGTCTCACACTGGTCAGATCTTCAGACAGGATGAGTTCTGTACcagcagtgtttgggtccagaaccagaggagtgtaggagaccatgtccttcatcttgttccagatgttgaagctcaggttgcccaggtgtttggcctcgtctatcagagctcctgagagcagctgtggatcatccagcagggggcgctgctggactctttccactgcagccttgtagttgtagctgctatctctctgcttAGAGACTCTATattctccttcatcctctgactcttctgctcctcttcctccctcagtgcagccatcctgacctcctcttcttcttcttctagaaACTGGTGAAGCTTCTTAAACTGTTACttaatctgtctctctgtgtgtcgggCCTGGACCTTCATGTGTTTTGCTGTTTGAGCAAAGTTCATTTTAACTTGTTCAAAAACCTTTAACTTCTCTTTTAATGGCTCCAGAGTTTCCTTAAGTTTCTTCTTGTGTTGTCGGGCAGCTTCATCGATGGGTCTGAATCTGTGGTTGGAGTGTTTTTCTGAATCTCTGCAGACAACACAAactggctgctgatggtccagacagaagagtttgagtttctcagagtgtAGACTGGAGAGAGCCTCCGAAactctctgatctctctccaGTAAGGACTCACACAGGTTCTTCATGCCTGGTTTAACAGTGGTTCATCCTTTGAAGACCTCTTACAAACTGGACAGTCTCTGATCGGTCTATCTGTCCACCACCTCTGCAGACAGTCTTTACAGAAGCTGTGCGTGCATGACAAGATGACAGGATCTTTAAAGATGGCTGTGCAGCAGACAGCAGAGATCTTTCTCTAATCTGAAAGCCATTTTGTCTCATGggtgaaagagacagaaagtcCAGTCAGTCATGGCTAACTTAACAGTTTTTAGTCCAACTCAACTTCAGTGTGTGGACAGTCAGCAGGTTGAAGCAGCAGTGTTGTAGTTTTCCACGTTTCTCTCCTGTAGCTGAACTCACTCAGAGGAAGTTGTTAGTTTGGTCTGAAGGTGAATCTGATCCTCTGTTTTTCTGTCAGTGTCTCTCTctaattcagttcaattcaattttatttatagtatcaaatcataacaagagttatctcaagacactttacagatagagtaggtctagattCACTAATTCCCTCAAGACCAAGCATgtagtgcaacagtggcaaggaaaaactttcttttaggcagaaacctcagaccagcagggcgttgcaggacaccacctgtctatactttgtatatcacattgcacttttctgctctttttgcacttctggttggacgcaaactgcatttcgttgtctttgtacttgtactctgcacaatgacaatacagttgaatctaatctaatatccAGGCATATCAGGTCGTAGCAGGGCACATCAGGGCGTAGCAGTGCATATCAGGGCTTAGCTGGCCATATCAGGCCGTAGCAGGGCACATCAGGGCGTAGCAGTTTATATCAGGGCGTATCAGTGAATATCAGGGTGAAGCAgtgcatagcaggacgtagaaAAGCATAGCAGGGCATATCAGGGCATTGCAGGGCgttgcagggcatagcagggtgtagcaaaggaaagcagggcgtagcagggcatatcAGGGTGTatcagggcatagcagggcgtagcagggcaaaTCAGGGCGtattagggcatagcagggcgtagcacggcatagcagggcgttgcaGTGCACTGCAGGGCGTTGCAGTGCACTGCAAGGCATAGCAGGTCGTTGAAGGGTGTTGCAGGGCGTTGCAGGGTGTTGCAGGGTGTTGCAGGGCATAACATGGCGCaaagcaggaccacggcaacagctgcaaccatgatttaggtgccaccctaatccaggTAAAACTGCGAggcgagaaaacataaggactcctgggaataagctccccaaagctaaattagtaacaagcagttctgggacaaggatgcacagatggaaagagagacgagagagaagcttagtgtgtcaaaggaaatcccccagcagtctaaaactagaacagcataattaagaacTGGTCCAAGGTAAACCTGAGCCAGCcctataagggttggtagatgaatctgacgactatgaggAGGAGCAGAGGACGAAGAACAAATTGTTTCCTGGTTTGTCTCAGGTGAGTCAGGTGATGGGTGGAGCTCTGTCACGCGTCTTCTGCCAAATATTGTTGCTTCACCTGTAACACAGGGGTGTGTCTCATTCCTGAGTGGTGATGCTGGATATGTAGAGTGATGCAAATGATAGACTCTAAGAAATATCTATGTATTAACAGTTGTATGGCTGTATACTTTGTCCATAGAACATGGTTCATGgttctatttttgttttttacatttcaaacatTATTTATGCTCTGCCACAGAGGTTGGTTTTGGGGGATTAAAGAATTAAGGGGCAAAGTCCAGTTAATGAGCTGCCAGaactttttctatttctatatcttttttcaaaataaatttgaatgtagtggaggagtaaaaataaaagatatcaGACAGACAGCTCAGCCACTCCCTGTTCCCTGAAACTTACGTTCACATTGAGTCTTTGTTCTTCAGTTTCTGGATTCAGCAGCTGGTTGAAGTGGTAGTGTCCCAGTATTCCCAGTGCTCCCTCCTGGAGATGTCTTCTCTCAGTAGAAGTGGTCGTGTCCCAGTATTCCCAGTACTCCCTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTAGTGTCCCAGTATTCCCACTACACCCTCCTGTAGATGTACTCTCTCAATAGAAGTGGTAGTGTCCCAGTATTCCCAGTACTTCCTCCTGTATATGTCCTCTCTCATTAGAAGTTGTAGTGTCCCAGTACTCCCAGTACTCCCTCCTGTATATCTCCTCTCTCAGGGGAAGTGGTAGTGTCCCAGTATTCCCAGTACTCCTTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTAGTGTCCCAGTATTCCTAGTACTCCTTCCTGTAGATGTCCTCTCTCAGTGGAAGGGGTCGTGTCCAAGTATTCCCAGTACTCCTTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTCGTGTCCAAGTATTCCCAGTACTTCTTCCTGTAGATGTCCTCTCTCAGCGGAAGTGGTTGTGTCCCAGTATTCCCAGTATTCCCAGTACTCCCTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTAGTGTCCCAGTATTCCCAATACTCATTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTCGTGTCCCAGTATTCCCAGTACTCCTTCCTGTAGATGTCCTCTCTCAGTGGAAGTGGTAGTGTCCCAGTATTCCCAGTATTCCCAGTACTCCCTCCTGTAGATGTCCTCTCTCGGTGGAAGTGTTGGTCCGAAGGTGAGtcttattgtgtatgtgtgtgatctTAGTAAGGCAGAATAACAACCTATTTCTTTGTTGGTCTCAGGTCAGATGAGTCATGTGTTCATCATTCTAGTTTGTCAGGTTGAGTTTCATTCCACACTGATTAATCATTTCTTTAGAAACCCATCAGAAACTGTAAACTACCCATATCCTCGGAGGGTTTAACAACAGTTTTAGAAcaagcttttttaaataaatgtgtgtgtctgttgtccCTGCAGTCAGAAGGTCAGTCTGAAGGAGAGGGTCTTCTCGTCTCCCCGGAGTTCAGGAACCAAAGGGAAAGGTTCCCCTCAGCACGGGACTCCCACAGTTGGATCCGGTGGTGCTGGTCCTGGAGGTCCTGGAGTCCTAGGGAATGTCCAGGCCTTGCGACGGTCCCCCAGCTTGGAGCCCAGTCTGGAGGACAGTCCCAGCAAGGTTCCAAAGAGCTGGAGCTTCGGAGAACGTAGCAGAACCCGACAGGCCTTCAGGATCCGAGGAGCTGCCTCCCGCCAAAACTCTGAAGTGCTGATAGAGATGCAGGACGAAGAGTTCAGACAGAAGAGCTCCCCAGACGCCAGCCTGCCAGGAGAAGACATGGCCGATGACAACAAGAGCTGCCACTGCGAGTTTGTCCCACAGGATCTGACCCCAGGGTTAAAGGTCACCATCAGGGCTATCTGGGTCAAAGGTTACCATCAGCTGTTGGtataATGCGATTCATGGTGTCTAAGAGGAAGTTTAAGGAGAGTCTTCGTCCCTATGATGTAATGGACGTGATTGAACAGTATTCAGCCGGACACCTGGACATGCTTGCCCGCATCAAGAACCTCCAGTCCAGGGTGGATCAGATAGTTGGCAGAGGGACACCAATCGCAGACAAGGACCGTCCCAAAACAGCCAACGAGGAGCTTCCTGAGGACCCAAGCATGATGGGACGGTTGGGGAAGGTGGAGAAGCAGGTCCTCTCCATGGAGAGAAAGTTGGACTTTCTGGTAAACATCTACATCCAGCGAATGGGAATCCCTCAGGCTGAGACCGACGCCTACTTTGGACCCAAGGAGCCGGAGCCAGCCCCGCCCTACCAGAGTCCAGTGGACCAACTGCAAAAGAGCCAGTCCATCTCCAAGATCCCCCAGGTGTTGCCTGGCGACCACGTTGAGAAGAGTCGTTTTGGGACAAAGATGGTCCGCTCCAGCAGCTCCACCGGACACAGGAACTACAGCGCTCCCACCTGCCCGCCCTCAACCTCCTGGCAACCAATCAGCTCTCAGCTGCACCAGCAGGCCCCTCCCCAGCGTAGCCATGGCAACACTCCGAGTCCAGTGGGGGACGGGTCACTGGTTCGACTCCCGCCTCCTCCGGCCGGAGAGAGACACGGCGGGAACCGATCGAGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61362 lncRNA upstream 10117 44714173 ~ 44714690 (+) True G45831
TU61095 lncRNA upstream 255816 44400478 ~ 44468991 (+) False G45635
TU61094 lncRNA upstream 321632 44400446 ~ 44403175 (+) False G45635
TU61088 lncRNA upstream 321632 44400478 ~ 44403175 (+) True G45635
TU61098 lncRNA upstream 334606 44361162 ~ 44390201 (+) True G45636
TU61348 lncRNA downstream 80 44742275 ~ 44744790 (+) False LOC120557302
TU61402 lncRNA downstream 64515 44806710 ~ 44807403 (+) True G45863
TU61415 lncRNA downstream 81333 44823528 ~ 44824784 (+) True G45873
XR_005638908.1 lncRNA downstream 97867 44840062 ~ 44841232 (+) True LOC120556889
XM_039798363.1 mRNA upstream 15855 44670589 ~ 44708952 (+) True ralgapb
XM_039798362.1 mRNA upstream 16081 44670589 ~ 44708726 (+) False ralgapb
XM_039798366.1 mRNA upstream 16081 44670589 ~ 44708726 (+) False ralgapb
XM_039798368.1 mRNA upstream 16081 44670589 ~ 44708726 (+) False ralgapb
XM_039798367.1 mRNA upstream 16081 44670589 ~ 44708726 (+) False ralgapb
XM_039796848.1 mRNA downstream 29709 44771904 ~ 44803353 (+) True LOC120556948
XM_039796849.1 mRNA downstream 29904 44772099 ~ 44803353 (+) False LOC120556948
XM_039796703.1 mRNA downstream 99121 44841316 ~ 44842831 (+) True LOC120556890
TU61241 other upstream 225511 44495576 ~ 44499296 (+) False tsen2
TU61239 other upstream 230088 44488999 ~ 44494719 (+) False tsen2
TU61117 other upstream 317358 44403903 ~ 44407449 (+) True G45647
TU61091 other upstream 363439 44360786 ~ 44361368 (+) False G45635
TU61017 other upstream 767634 43956827 ~ 43957173 (+) True G45577

Expression Profile