RNA id: XM_039796277.1


Basic Information

Item Value
RNA id XM_039796277.1
length 1718
RNA type mRNA
GC content 0.40
exon number 4
gene id si:ch73-130a3.4
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20663326 ~ 20670676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagaagaagaagaagaagaagaagaagaagaaagtatTAATAGTAGTAACGTAGTTGTTTGCCTTGATTTAGACCGTTGAGACATTTGAATCCGCAAACTCCTTCGAGTTGTTGAGAATTCTGTCCAGGCAGTTGCCTAGTAGCAAACAGCATTTTTTGGTGGTCGTAGTATATGTCGCCGCCATATTGGACCGGGCTACGTCTCAGAAGATTAACGTTTGTCTGGAAAAGAAATGCCTGACTCGTGTGCAGCTTGGGGCTGTAAAAACCGTCGAACAGCCCAATCCAGATCTCTGGGAATTACCTTTCACAAGTTTCCCAAAGCGAAAGAGGTGAGGAAGCAGTGGGAAATAGCTGTAAGAAGGAAAGGTTTTTCCGCCAGTCGGTCCTCCGTGCTCTGCAGTGAGCATTTCAAGCGGCAGGACTTTGACAGCACAGGACAGACTGTCAGGATTAGAGATGGAGCTCAACCATCTGTCTTCAATTTCCCAAAACATCTACAAAGACCAGTGGCAACCAGGACAACAAAAACCTCAAGGAAGGCTGAAGAGAAGCTGTCAGTGGAATCTTCTCCGCTTTTGAAAGAGACTGAACCTCTCAACGTTGACCACTCCTATGCATTGCCTTCATCTCCCACTGATCTTAAGGCCAGACTCAGTGAAGCCTTGGCTAGGGTGGAGAGTCTGGAGCGAGAGATGAGGAACGTGAAGGACCGAGAACGGAGGGCAAAGAAGATGGTGCATGGTCTTCTGGAAGATCTGAGGAGGAATCGCCAATCCCcctgttttgtaaaaataaagcatAACTTGTACAGGACAAAACGTAGAAACTTGCACATCAGGTAGAGCCTAgagctttttttgttgttatgaatgaggttctattttttttattttttttacttacttatACCAAAATCTTAGTTTTCTGGATGTCTTGTGGAGGGAGGACATAACTGCTGTAAGAAGCACAGGATCAGTCTGTTGTGGtgttaaaaatataatatgtaatatttgtgcattaaaatgtctaaaatagaCTACCTATggtatatatttgtatagtgTACTCTAATCTTAGGTAAGGATTGACATGTGGAATATATTGTAACattgtgtctttagctgctggctaatgttagcttgcttgctcgataactggtcagctaccacCTCAAATAAaatgtgggaaacactgcagctATTCGATTAGAATGACATGACATTAGTTAACAATCGTAAGTGTAAAAACCTTTTAATAGATGaactcgtccgtgaacagaTGCATTTTAATCTGCAACGGTGGTACACGAAGACAACTCCCATGATCCCATGCAACTTCACAACATCATCAAAAGTCTGTTTAAATTATAGCATGTAAAGatttgtaattatattttacagTCCATGGTTTTGATAGAGAGACTCCTAGTGGCAGAAAATTACACTATTCTACATTTAATATATGCTGTTTTTAATCCCATATTTTTGAGAGGGAACAGAGAGCCCTCCGCCTTTTTAACCAGCCAAATGTCTTCACTACTTATTTTCCCATCAATATGCATATCTGTTTTTATTGCTGCTGTTAACcccaaaacagcaaaaaatgcactactgtttttttttttttcttgtgtagtATAAAGGGACTACAACTGTATTTAGTTGTGCAACCCTGTgttgtacaatgacaataaattaACCTTGAATCTTGCAA

Function

GO: NA

KEGG:

id description
K23207 THAP6; THAP domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54466 lncRNA upstream 131972 20491994 ~ 20531354 (+) True G40488
TU54439 lncRNA upstream 239830 20419140 ~ 20423496 (+) True G40479
TU54379 lncRNA upstream 396960 20265840 ~ 20266366 (+) True G40442
TU54370 lncRNA upstream 435510 20227337 ~ 20227816 (+) True G40433
TU54264 lncRNA upstream 505801 20156854 ~ 20157525 (+) True G40357
TU54621 lncRNA downstream 52546 20723222 ~ 20725950 (+) True G40592
XR_005639032.1 lncRNA downstream 55418 20726094 ~ 20731954 (+) True LOC120557890
XR_005639061.1 lncRNA downstream 96306 20766982 ~ 20767927 (+) True LOC120558155
TU54702 lncRNA downstream 269030 20939706 ~ 21004960 (+) True G40652
TU54755 lncRNA downstream 466110 21136786 ~ 21137939 (+) True G40698
XM_039796687.1 mRNA upstream 59437 20591009 ~ 20603889 (+) True LOC120556874
XM_039796688.1 mRNA upstream 59437 20591014 ~ 20603889 (+) False LOC120556874
XM_039796680.1 mRNA upstream 116480 20524228 ~ 20546846 (+) True si:dkey-264d12.5
XM_039796681.1 mRNA upstream 116480 20524228 ~ 20546846 (+) False si:dkey-264d12.5
XM_039796683.1 mRNA upstream 116480 20524228 ~ 20546846 (+) False si:dkey-264d12.5
XM_039799026.1 mRNA downstream 10312 20680988 ~ 20700924 (+) True mmel1
XM_039798557.1 mRNA downstream 45712 20716388 ~ 20722893 (+) True slc45a1
XM_039798558.1 mRNA downstream 45712 20716388 ~ 20722893 (+) False slc45a1
XM_039798560.1 mRNA downstream 45712 20716388 ~ 20722893 (+) False slc45a1
XM_039798385.1 mRNA downstream 108144 20778820 ~ 20785678 (+) True errfi1a
TU54259 other upstream 514636 20148104 ~ 20148690 (+) True G40353
XR_005638939.1 other upstream 739777 19917889 ~ 19923549 (+) False abhd14b
TU54184 other upstream 803985 19851548 ~ 19859341 (+) True cenps
XR_005638959.1 other upstream 1031314 19617181 ~ 19632012 (+) False LOC120557344
XR_005638988.1 other downstream 1279700 21950376 ~ 21991799 (+) False itga7
TU55524 other downstream 3078234 23748910 ~ 23760951 (+) False cbfa2t2
TU55525 other downstream 3087082 23757758 ~ 23760951 (+) False cbfa2t2
TU56251 other downstream 5597926 26268602 ~ 26273315 (+) True G41825
TU56292 other downstream 5871831 26542507 ~ 26548799 (+) False G41850

Expression Profile