RNA id: XM_039796289.1


Basic Information

Item Value
RNA id XM_039796289.1
length 2607
RNA type mRNA
GC content 0.50
exon number 3
gene id si:dkey-195m11.8
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15359663 ~ 15375612 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAGGAGTGTAGGAGAGTAGGAGGGTCCCAGAAGAGAGCACaagcctctcacacacacaaacacacacacacgctcacactcacacataaacaTTTACGTTGGCTCCTCTGTTGTACTTTGTGGAATAGTGGATTACTTTCCTAACTGAACCACTCATCGAGCTAATCCAGGCACGATCAGGTGGCAGTGTGTCGGAGCGGTGTTGAACTGTGAAATGAACCATGAAGGGGTCCAGCAGGCCAGTCACTAGCCGAGCCAACAGCCACACAACCACCAGCAGCAAGAGAAGCAGTAGCCCGGGGAGGCCCCGCAGCATGCAGCTGGGCCCTCACTAGCACCAAGTGGACCCGGTCCTCTCCTCTTTACCTGGGGCCAGGGCTGCAGAATGCTCAGTCCTGTCACCCCATACAGTCTGTTGAAGATGCACTGGTCCCCGGAGCACGCCGCCCCCTTATCTCAGTGGCCTGAGCAGCACCTAGATGTCACCTCTACTACCTCGCCGCCGTCTGCCCACAAACACGACCCCTATGCTACGGCTGGTCGCCGTAGCTATGCCCCTGCAGGTTACCCTTGGGCAAGTGATGACATATCAGCCCTTACTGCTTCTTCTCTGCTCAAACGCTACGCTGAGAAGTACTCGGGCTTGGAGCTGTCCTATGAACGCCCTCCTACAGGGGCCTACTCAGAGCCTGGAGCTTTCCTGAAAGCTGAATCTGAGCCATGGGCACTGGGTCAGGGCATGGAGTGTTATCCTGGAATGGAGGCATTAACTGGCACCAAGGTGGGCTCTGCATCTGTGGGCATCCCAACCACAGGAAGTGTGACAGTAGTGAGCAGTAACTTGGCCTCTGAGCCAGGCTACAGTGGCGCTGGCTCCTGCAGTGCCCCGTCATCTCAGGAATACCATCCTGCCTACAACAGCACCTACCTGTCCTCAGGATACTGCCCTCAGCCCAGCGCAGCACTTCCCCCTGCCCCTCTACACTCTTTGCAGGCCGCACCCACTCTGGTGCCCAGCTACAGCGCCAGCACTCCTGTCTACAACTACCCTCCAGGGTGCTACCCCCAAACAAGCCTGTCTTCTGGATACAGCCACCCCAGTGCCTCCTACCTGCCCCCTGGGATTAGCGCCCCCACTCCTCTGGCCCCTAGGCCCACCATGGTGGGGGGCAATTACAGCTACCCATCTCACAGCCTTGGAGGGAGCTCCGAGGGAGGAGTGCCACTGAAACGCAAGGCCTTTGAGATGGCAGAGGAAggacaggagggaggagaggtggACGGATCGCGCTACAGAAAGTATAGCAACGGCCATGGAAACAGTCACAGCAAAGGTCACGGCAATGGCTACGATATGAGCGGCTCGACCTCAGACCCGCAGGCCTACAAACCTGGAAAGCCCATGATGTCACCCCCTTATGGCGGGGCAGGGGACTACAGCCCACCATCAGGCCAAGCAGGAGAGAGTGTGTCAGGGGAGCACAACTTTCCTCAGCAACAAAGAATGTCTATGAAGATACCTGCATCGCACACAGGATCTGAGGACCCCACTGCAGGGCGCTGACAACACTGGTCGGCATTTGAGAGGATTCTCTCACTCTTTGAAACCAACCAGGGTTCTTAATCCAGACAGATTAAGGGGGAAAAAGGTTTAATTTCAGTAGTGAACAACAAGAGGGCACAAGACTGGTATTTCTTGTGCATCCtttaacattttcattattcatgtttttccaAAGATTCAAAGGGACATTTTGCCATGTAAGGTTGAGGTAAGTTTTAGGGGTGAGGTTAAAGAATTCTCTACATAGATAGCGTTAAGACAGTCCAAACGTATGAGTGTCTGTTTCTCTCAGGATCCTATTTATTTCCTTTCTGctactgcagcagcagcactgcaaCGTTGCTGTTTTAGACGTTGGTGTAATTATTTTTGGCCATTATGTATGTAAAAGGCCTTTGACTGCAATACGTTCTACCACACCACAAAAATCATTACCGACCAAAAAGTAAGGAGAGCAATAACTGAAATGGTGAGATTGCCATACTACTTCAGCACAATCACTGCTACTTTACACAGCTTACTCTCCGGCTCGGTGTGGCCTCGAGAAATGAATGTTTCCCTGCTCATCCCTCGCTTTCCCCAACCTTTACTCAttcttgactttttttcagtttcctttACCCCTTCTTTTCATGTTCTTTATCTTATTCTATCCCGGTGTCCTGCTTCTTGTTCTCATCCTTTTTCATTGCTGcaacaacttttgtttttgtccagTTTATACATAACAAGCTGCTTATCAAatgactacattacattatacatGAAGCCACCCTTGAAAATAGTTTTGAGAAAGATTGGGAAAATAATCTAAGATTTTAggttcatttaaaaatgtatttagcaTTCACACAATGACAACATTTGAGTATTTGCAGATCATCTTCAAAGCTTGTTGTTTACCCGCAGATTTTTGCTGATCCAGAAACTAACAGGTATATTTTCTCAAGAATCTGCGAATAATGGCGCAGCTTACACCTATAACAGTCAAACTATTACATTAAATAATGACTATACAGATctacaaaacaaccaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 108730 15250569 ~ 15250933 (+) True G38670
TU51769 lncRNA upstream 382759 14969673 ~ 14976904 (+) False G38538
TU51770 lncRNA upstream 387366 14915678 ~ 14972297 (+) True G38538
TU51749 lncRNA upstream 495556 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 502594 14806648 ~ 14857069 (+) False znf740a
TU52021 lncRNA downstream 21117 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 86689 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 166641 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 250699 15626311 ~ 15626840 (+) True G38829
TU52133 lncRNA downstream 268449 15644061 ~ 15644399 (+) True G38832
XM_039798257.1 mRNA upstream 10400 15318249 ~ 15349263 (+) True slc4a8
XM_039798259.1 mRNA upstream 10400 15318249 ~ 15349263 (+) False slc4a8
XM_039798258.1 mRNA upstream 10400 15318249 ~ 15349263 (+) False slc4a8
XM_039798751.1 mRNA upstream 53061 15302830 ~ 15306602 (+) True LOC120557984
XM_039798743.1 mRNA upstream 61179 15214670 ~ 15298484 (+) False LOC120557980
XM_039796279.1 mRNA downstream 77581 15453193 ~ 15455490 (+) True LOC120556644
XM_039796278.1 mRNA downstream 79995 15455607 ~ 15456964 (+) True LOC120556642
XM_039796349.1 mRNA downstream 231070 15606682 ~ 15626045 (+) True LOC120556683
XM_039796350.1 mRNA downstream 231070 15606682 ~ 15626045 (+) False LOC120556683
XM_039796351.1 mRNA downstream 231070 15606682 ~ 15626045 (+) False LOC120556683
XR_005638919.1 other upstream 485204 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 543227 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1021903 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1126138 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1831344 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 269899 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 589802 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 674293 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1057626 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1141924 16517536 ~ 16543580 (+) True G39116

Expression Profile