RNA id: XM_039796295.1


Basic Information

Item Value
RNA id XM_039796295.1
length 1879
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120556655
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40807228 ~ 40821097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAATATGTAAATGGATTTACATCTGGTACAGCCTCAGGAAGACCTCCAGTGCAGGCCTCAACAAGCCGGCTCCACACAGAGACAATGGAAAGACCAAAAAAGAAATTCTGCAGTAATGGAGCCAAAAGCCTGACCTTGCCAACCATACCTCTATTTGCACCATCAGCACCTGCTGTGACAGTCCCTGAACCAAGACAAGATGAAAGAGAACTCCGGCTCTATCAGATGCTGGAAGAGATAAAGGGTCAAGTCAGGCAGAATTCGCTCCTCCTTCAGGCCATACTGAGAAGAGAGAATGCAGCTGAAGTTGTAAATGAGGAATTTCAGTTTCCTTTAAGGAGCATGACAGGCATAAAAGATCTGGAGGATAGGCTgtcaaacagagacacacaacgtTCTCTAACAAGATATCTTACCAGCTTGGGTGGAACATCTGCCAAAGACATTGTCCACAGAATCATGAGGGAGATTATGACCAATGAGTTGGCCAACAATTTTAATTGGCAAGGGAGAGGACAGAAGAGCCCCTTTTCTGCGCTCTTGCTGGCAAAAGTTGTCATAGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATGTGGTGTTAAAGTGTTTGTGAAAGAAGACAGTGATGCCATGTTACCCTGTTCTCTCAGCACCAAGGAGAGCATTGTATCAGGGGTCTTTGTCTGGAGGAAAGTTGCTCAGAAAGATAAAAGTCAGAAAGTGTTCCTGTATGACGTAGGCAAACATTACAACAACGGTCGTCCAGGTCAGAGTGAAGAGTTCAAAGGTCGAGTCTCTCATTTTAAAGATCAACTTGAGTACGGCAACGCCTCCATAATCATCAGAAATACAAAGGTGACCGACAGTGGAAACTACACCTGTTATTTTCCCCGTCTTCATCAAACAGTCTACATTGAACTTGTTGTCGAACCCTACATCAGGACTCTGAAAGCCACAGCTGGCTGGgccctgctgcagtgtgtggtCCGAAGGGCGGCTCCAGAACCTAAACTAGAGTGGGAGGACAGTGCTGGAAACAGACTTCCTGCTGAGGAACCACAGACCTCAGAAAGAGGAGGCAGCTACAACATCACTCTCAACACTACTGTGACCAAGACAGACAACTACCTCTGTGTAGTAACACAGGAGGAAATCAGCCATCAGACTCACGCTGAGACCTCTGTTCATATCAGTGGGAAAGTGTGTGAGGACTCCTTCAGTAAAGGGGCCATCGGATGGATGATTGGTGCATTTGTTTTGGGAGCTCTGATTGTTGCTATAGTTCAAGCTCTGCTTAAAGTCACAAATATCATCACAATACGCTGTAATAAAGGTTCTCGTCAGCAGGGAAACGGTTTGGGCGACCAGGTAAAGGGTTCATGTGAAGAGCGTTCAGAGATGCTACATCCAAACACGTCTCCCCAAAGTAGCACAAATAAACAGCTCACAGGGCTGTGTTAGCAAACAAGTAAGGTTAGCTCCGGATGGGAAACATTTTGTTTCCTGGGATGGCAAAGGCATTttactctgattggctagtacttaTTGCCTTCGTTAGttggattggttaggtttaggcatgaggagtgggattggttgaGGTACCAgtgtaagccaatcagaggtggAGTAAGGAAACCGCGACCAAcagtaattttttattttttttaaacatcttttAATTAGAACACAAAGAAAGATTACAATGACAAACTCAATGTTTGATAATTCAAGTAGAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59862 lncRNA upstream 12430 40729150 ~ 40794798 (+) True G44712
TU59766 lncRNA upstream 23416 40738910 ~ 40783812 (+) True G44632
TU59762 lncRNA upstream 32170 40716801 ~ 40775058 (+) True LOC120557697
XR_005639004.1 lncRNA upstream 32921 40773029 ~ 40774307 (+) False LOC120557697
XR_005639005.1 lncRNA upstream 34794 40759809 ~ 40772434 (+) True LOC120557698
TU59882 lncRNA downstream 6323 40827420 ~ 40867607 (+) True G44731
TU59759 lncRNA downstream 27718 40848815 ~ 40930833 (+) False LOC120557312
TU59858 lncRNA downstream 110932 40932029 ~ 40938117 (+) False G44711
TU59767 lncRNA downstream 128824 40949921 ~ 41025342 (+) True G44633
TU59903 lncRNA downstream 224747 41045844 ~ 41077132 (+) True G44751
XM_039798229.1 mRNA upstream 9179 40738891 ~ 40798049 (+) True LOC120557677
XM_039798230.1 mRNA upstream 18582 40738894 ~ 40788646 (+) False LOC120557677
XM_039798235.1 mRNA upstream 72751 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA upstream 72751 40721696 ~ 40734477 (+) False LOC120557681
XM_039798240.1 mRNA upstream 91107 40684822 ~ 40716121 (+) True LOC120557684
XM_039797509.1 mRNA downstream 51752 40872849 ~ 40914254 (+) True LOC120557310
XM_039797511.1 mRNA downstream 51752 40872849 ~ 40914254 (+) False LOC120557310
XM_039797510.1 mRNA downstream 51752 40872849 ~ 40914254 (+) False LOC120557310
XM_039797512.1 mRNA downstream 51752 40872849 ~ 40907094 (+) False LOC120557310
XM_039797515.1 mRNA downstream 101491 40922588 ~ 40931383 (+) True LOC120557312
XR_005638994.1 other upstream 139722 40666199 ~ 40667506 (+) False LOC120557687
XR_005638993.1 other upstream 265997 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 300658 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 301172 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 643618 40156208 ~ 40163610 (+) False LOC120557666
TU60455 other downstream 929906 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1048633 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1075925 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1084432 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other downstream 1084510 41905607 ~ 41912086 (+) False map1lc3a

Expression Profile