RNA id: XM_039796297.1


Basic Information

Item Value
RNA id XM_039796297.1
length 2102
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120556657
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18007456 ~ 18012488 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCAACACTTGTCTATAAATAAATGTGCTTATTTTAGTGCATGGCGGATTTCGGATAGTGATTGGCCATCTCTGAGTGAAGGGCGGTGGATCTTATTGGTGCAATCTAGTGTCCTTTTAAGGACACACAGAAGTACTTGTTAAAATATTCCATTACATCCCGGAGGGGCGGTGCTTTGAGAGTGTTGCATGCTCCGCCCGCTCGGGATGTTTGGTTTATTTTCTGTAATCAAACACAAAGGAGTGTTGAAGTGTGACAAGTGCGTCTCGGCTGTATTCGCAGCATTTAAACTTTACTTAGGAGGACAGAGTTCATACTCGACACACATAGAAGAGGAGAGAAATCTATGTCTCTTGTGGACCTGATGGGACAGATGGGAGTAAGGATGCTTCACAGGAACCCGCTGCAGGCTGCCTGGCTTTGTTGTCTGTTGGCTGTTCAGGTGCACAGCTGTCCAGATACCTGCGGCAAGTGTTCAGGCCCAGATAATGACCAGTGTGAGGAATGCAGAGCAGGATGGACACTCCATAATAACACCTGTGTAGACGTTGATGAGTGTGGCACGGAGCTGGGTATCTGTCCTACAAACAGCTACTGCTTCAATACAGATGGTTCCTTTGAGTGCAGAGACTGTGACTCGGCCTGTGTGGGCTGTATGGGTAGCGGACCAGCACGCTGCCGGAAATGTGCCTCTGGGTACACACTGACAGGGTCCAAGTGTTTGGATATAGATGAATGTAGTGACAGGGTACTTGCCTGTCATGGTCTGGATGAGATTTGTACCAACACAGAAGGCTCCTTCCGCTGTGACTGTGCTGAAGGATTCGTCCATAGGGACGGAGTCTGTGTGAAGAAGCAGCAGCCTGGTGTTCGGGAAAAAGGTCTGTTTGAGGATATTCAGGACGACGAGGTGGAGGTGCTGCAGCAGATGATCTTCGGGGTGGTGCTTTGCGCTCTGGCCACGCTGGCTGCTAAGGGGGATTTAGTTTACACATCTGTATTCATGGGAGCAGTGGCAGCCATGGCAGGGTACTGGCTTTCTGACAAGGGAGACCGTTTGTTAGACAGCTTCTTAAAGGGACGTTAAAGCTCAAAAAGACTTTAACATTGCATGTGCCACTGCTCAGCAAGGCCTGAAACAATCCCTGTCCAGATGGACAATGTCACACTTTTCTATCTGGAAGATCATTTATGGCAACATTTTAACAACCACTGAACCACCatgaaaataatataaaaccAAGTTCAGTGTACAGAGAGTAAATCTCAAAAGAACATCCCTTCTTCCACATTTGAAgccttttaatgaaattcaggTTTTAGATGCAGATACACAGAAGAAGTGACAAATCAGGTGACAGCTTCTTCTGTCCCTGCATCTTCTTTCTGTGTTGTCTGACTGACTATGGGAAATATCTTTTTAATTTTCACCGGCTAGGATTGATCATGATTCTTCATCACTACACAGTTTTTAGATATCATCCTGTAATATCACAGAGATGGGCAACATGAGTGTGGAAGTTTATTCTTGACCTTGTAAATAGTAGTATGACAAAGTTTAATTCAAGGTCCACTTACCAGCTTTGTCTGGAGCCTTTCAACTGTATTTTACTGTCTTCATCAGTGGATGGTGTTTGCATTGTTATCGTCACAAACTCCAGTAACTGATGAGGACCGCAAGATGCATTTGAAGACTTTTAAACGACTGTCCAGCTGTACCACTTTTCTGTAATGAGCTGGAAAGTGCTTTTTATTGATACCTTGTTCTGGCATTTGTAGCCACCAACAATGGTGTCAATTGTAGCTTCAAGAATTTACAGCTTGCTTGAATTTGTTTGCAGAAACCATGTACTGTATTAGATTTACTTCTTATACTGTAATAATGGCACTGCATTTGTAACATGTACATTATACTATATAGTAATATTTCTAATGACCCTTTCCTCCACGTTcacactgtaaacccagatttacAGTAGTTTAGTGGTCACTactttacattattacattacatgtcatttagctgacgcttttatccaaagcgacttccaattaagtgctttcaaccctgaaggtgcaaactccagacaacaagtagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 154090 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 221646 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 271550 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 278738 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 285108 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 436359 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 531667 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 558103 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 561194 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 561494 18573982 ~ 18574211 (+) True G39927
XM_039797895.1 mRNA upstream 78 17999932 ~ 18007378 (+) True LOC120557500
XM_039796419.1 mRNA upstream 8919 17982485 ~ 17998537 (+) True LOC120556720
XM_039797894.1 mRNA upstream 28854 17965362 ~ 17978602 (+) True LOC120557499
XM_039797881.1 mRNA upstream 45730 17951089 ~ 17961726 (+) False LOC120557497
XM_039797078.1 mRNA downstream 145701 18158189 ~ 18172130 (+) True rad54l2
XM_039799020.1 mRNA downstream 165255 18177743 ~ 18187751 (+) False rassf1
XM_039799021.1 mRNA downstream 170547 18183035 ~ 18187751 (+) True rassf1
XM_039798908.1 mRNA downstream 177094 18189582 ~ 18194911 (+) False tusc2b
XM_039798907.1 mRNA downstream 177095 18189583 ~ 18194911 (+) True tusc2b
XR_005638976.1 other upstream 80569 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 114036 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 398240 17607930 ~ 17609216 (+) True G39581
TU52841 other upstream 809239 17193221 ~ 17198217 (+) False srsf3b
TU53438 other downstream 177127 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 177127 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 203218 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1312341 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1604693 19617181 ~ 19632012 (+) False LOC120557344

Expression Profile