RNA id: XM_039796351.1


Basic Information

Item Value
RNA id XM_039796351.1
length 2278
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120556683
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15606682 ~ 15626045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGAGCACAGGACGGAAAATACAACAAGTGAGTGAACTGTTGCTCTGCAAATAAAGTCGCTCAGCAGCGGGATTTCCGCCGGGAGAAAGTCTGTAAAAGTAACTCGTCAGAATGTGTGATTTTTAATTGAAGGTGTGCGACGCGACTTTGAATtgcattattattcatgtttttattttatttttattccgtCCGTGTCGGACTGCTGTGAGCGTTGCTTTCATCATTTTGGACGGCGCGGTCCAGCCACAAAGCAGGAGTCCCGTATGATATGCTTCAAGTTTAAATATTAGTGTGACTTTGAGTTTGCACCGGAGCGCAACTTCACCCGATGCGACAGTGAAACCGCTCTGTCTTGGAAGGATTTCATTCCGGTCCTGGACCAGTTTTCTTGCGACGTTTCTTAACCTGCAGCATGGAAAAAACGACAACACTGAGAACCAggtagaaaagaaagaaaaagattaGTTACTTTCTTCAGCTTTCAGCCTGGCCGGCACAACCATTCCAGCTAAGGGGGAGGAGGACCTCCTCACGCTGGCCGCCTCCCGGCTCAGCCGCAAGAAACGTGTCATTGGGGCTGGAGTCGGTGTGGCCATGGTCCTGGTCCTGCTGGTTGCCATTCCCCTATTGGTCCACACCACCAAGGCAGGAGGGTCCGGAGGAGGGGGCACGCATTACGAGATGCTTGGGAGCTGCAAGATGGTGTGTGACACTTTCACCCCCCCACAGGGAGAGCTGACAGCTGTCTCACCTCAGCCCCCAGACTTCTCAAACCGCAGGAGCAAACAGGGGTACAGAGGGAGCCCTGGACTTCCTGGACCTCCAGGTCCTAAAGGGCCCCCCGGAGAGCCCGGCAAGCCCGGCCCACCTGGTCCACCAGGACCTGGACCCGGTGGCTACGGCCCATCCTTCTATAGTCCCAAAATCGCCTTCTACGCAGGCCTCCGGAAACAACACGAAGGGAGTGAAATACTGAAGTTTGATGACGTGGTGACCAACGTAGGGAACTACTACGAACCGAGCACCGGCAAGTTCACCTGCCCTCTGCCTGGCATCTACTACTTCACCTACCACGTCCTGATGAGAGGAGGTGATGGGACGAGCATGTGGGCTGACCTGAAGAAGAACGGACAGGTGAGGGCCAGTGCAATCGCTCAAGATGCAGACCAGAACTACGACTACGCCTCCAACAGTGTCATCCTGCACCTGGATGTGGGGGACGAAGTGTGCGTACAGCTCGATGGGGGCAAAGTTCACGGCGGAAACACCAACAAATACAGCACCTTCTCTGGCTTCCTCATCTACCCTGACTGACAGTATACTCACATTTATATAGTCTCTTTCTGTAATCAAGCAAAAAGTGTCCTCTCCTTTCTTCATCTAACACCACCATGACTCCATTATGTAATTTGTCATTTCAACGCTCTTCAGTACACAAAACATGTAATAACATGATCATAGTTAACAAATTTGTGTAAAAAGGAATATAGTATTGTATATATTACCAGTTAgcaatctgatacacacacTTGTGTAATCATTATTCTGTCATGTACAGTAGGCTATGTGTAAGTATGGGTAAAAGTATGGTAAAAACACCTGATTCGCATCTGTTTttacattgacacacacacacacacacaaacacacacacacacacaaaggcttGCTCATATAAATTGAACTTCTCCTATCTGTTGTTACAATGAGACAAGATGACCATTTCAGCCACTGGTTTGAAATCAACTGAAATGATCTCTGAATGTAGACTGTAAATCGAAGTGTGTGTACTTGGCTACAGCCTCTCGCCTTTACTGTGAGATACATTTCCAAACGAGAAAAGTCATGAATATATTGATCGCAGCTGATAATACAGCCAACACCATGaacagtgtgttgtgtgtctatgtTCATGCCGGTGTGTGAGCAAACGCGTGTGTTTACCCTTCAGTTTGTGTCGAGGCTTAAAAGCATCACGTTGCTGTTAGTTTGACTTGCACAGTCCCCGGCTACTGTTAAGGGACAGGCTGTCAAGTTGTCGGTAACAGTCCCTTAACATACACAGTATATTGATACTGAGGTTTAGCTTTGAgatttaacctgagccagagcTCATGGCAGAGCCTCATCATGTCCTGATAATGAGCTGAGGCTTCCTCTACAGCCTTATCTGTTCAGTCACCCTCACATCTGGCATCCATAGTTTGCTACATGACTTTGctgaaatagtttgacattttgggaaatatgattgtttgctttcttgcccGAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52079 lncRNA upstream 63310 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 143230 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 209175 15396729 ~ 15397507 (+) True G38738
TU51940 lncRNA upstream 355749 15250569 ~ 15250933 (+) True G38670
TU51769 lncRNA upstream 629778 14969673 ~ 14976904 (+) False G38538
TU52129 lncRNA downstream 266 15626311 ~ 15626840 (+) True G38829
TU52133 lncRNA downstream 18016 15644061 ~ 15644399 (+) True G38832
TU52158 lncRNA downstream 47934 15673979 ~ 15755059 (+) True G38852
TU52172 lncRNA downstream 92951 15718996 ~ 15722184 (+) True G38858
TU52174 lncRNA downstream 101934 15727979 ~ 15729400 (+) True G38860
XM_039796278.1 mRNA upstream 149718 15455607 ~ 15456964 (+) True LOC120556642
XM_039796279.1 mRNA upstream 151192 15453193 ~ 15455490 (+) True LOC120556644
XM_039796289.1 mRNA upstream 231070 15359663 ~ 15375612 (+) True si:dkey-195m11.8
XM_039798259.1 mRNA upstream 257419 15318249 ~ 15349263 (+) False slc4a8
XM_039798065.1 mRNA downstream 5307 15631352 ~ 15643555 (+) True smarcc2
XM_039798066.1 mRNA downstream 5307 15631352 ~ 15643555 (+) False smarcc2
XM_039796730.1 mRNA downstream 31486 15657531 ~ 15661996 (+) True endou
XM_039798516.1 mRNA downstream 50822 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA downstream 58037 15684082 ~ 15709140 (+) False LOC120557865
XR_005638919.1 other upstream 732223 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 790246 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1268922 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1373157 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 2078363 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 19466 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 339369 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 423860 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 807193 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 891491 16517536 ~ 16543580 (+) True G39116

Expression Profile