RNA id: XM_039796381.1


Basic Information

Item Value
RNA id XM_039796381.1
length 1631
RNA type mRNA
GC content 0.45
exon number 14
gene id si:dkey-28n18.9
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15159592 ~ 15165727 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTGACTAACACACCATTTAGTCATTCTTTTTCCCTGAGCCAGCACTTTAGATCTGGCACTGTTTTACTCCATTTCTTACAGGACCAGTGTGCACTTTGACCCAAAAGGATATCCTGTGCCTTCTCAGCATTTGGAGCAGGAGCGCTTTAAAGCCAACACAAAAAGATCTCTACAGCTTTATACACTTTTATCGGGATAAACAGAGATTTAAGCATTTCAAAGCTGATAAAAGACGGACTGGAATCATCAACTTACAAACTTGACAATGATGGAAGAAGTAAAAGAAGTGACATCTACTCTGAGTGTAGATCGTCATAACATCAATGTCACAGAGGTGTTGAAAGACGGGGACTCACTTACCTTCCTAATTGTATCTCAAAAGCTGTCTGGGACAGGGGAGTACCACGTGGCTCGGGCCTATGATGATTTTGAATGGCTGCAGCAGCACCTGTTCTCTCAGGAGGATGTACCCGGGATACAGGGAGTCATAtttcctcctcttcctgcaAAGGCTCAGGTGAATGCATCTGCCAAAGTTATGAAACAGCTTGGTTTCCTTGGTTTAGGAGAGTGGCAGCCGTACTGTAAAGCATTGGAAACCTTCCTCCGGCAGATTGCTGCACACAGCATACTCAGCAAAAATAAAGCTGTAGAGATTTTTCTGACCAGCTCAGACCCTCCAGGCAGACAGAGAGTtaggaaaaacattttcaaccgGCTGAGTCAAGCAGtggaagagaagaggaaagaaggcCATAAGGATGTGGATCAGTTCTTTCAAACTGAACGTGATCATAACCTTGTTCTTGCCGGCTGTGCCAAGACTGCAGCTGAGAGATTCCTGGATGTGGTGCAAACTGAGCAAAAAATAGCAGTGGCCTGTGGTCACTTCTCAGCTGCTCTGCACCTCTGTGTGGAACCAGGGGAAGACTCTGACAAACAGGCTTTCTCTAAGGCTTGTGTGAAATTATCAGAAGTCTTTGATTCTATGAAGAAAAATATGACAAGTGTCGCTGAGAACAACGTGAGCACTCTTGGGCTAGGCCTGGACCTGGAGTCACGCTACCAGGAGGCAGAAAAGGAGATGCTCTTCAGGAGAACCTGTAAACTAGTGGAGTTAGAGTCTGCCAGAAGGAATGCAGAGAAAGCCAAGCCTGTAAAGAAGGCTGCTATGGAGGAGGTGAAGAAAGCAGCAGAGACGGAGTTTGATCACATTTGTGGAGTGGCTAAGCAGGAGATTGCACGGTTCCAAGGTGCGCGTGTGGAAATGTTGCAGCAGGCTCTGGTTCAGTGGTGTGAAAAGCAGCTGCTTACAGCCAAAGAAAGTGCTGAGCAGTTCAACCAGCACCTGCAAGCCTTAAGAGGGATGGCCTAGTGACCTATCTCTTAATGAAGCATCCTCAGTATGTCTAAACATAGCATGGGATAACCCAAACGTGTCCTTCACCCTGTTGTGCTGTATTCTGATGCTAGTGGATTCAATTACATCctgtgtaaataaagaaatgtatgTGAAAGGGAAACCTTCCTGATTATCAAACAGCATCCATATAATTTGTACACATATTTACTTTGCCTCGGTCTCTCCACAATCATACTCCTATACCAATAAAGCCCCTATAGAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51769 lncRNA upstream 182688 14969673 ~ 14976904 (+) False G38538
TU51770 lncRNA upstream 187295 14915678 ~ 14972297 (+) True G38538
TU51749 lncRNA upstream 295485 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 302523 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 303585 14765297 ~ 14856007 (+) False znf740a
TU51940 lncRNA downstream 84842 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 231002 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 296574 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 376526 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 460584 15626311 ~ 15626840 (+) True G38829
XM_039796383.1 mRNA upstream 194 15157708 ~ 15159398 (+) False LOC120556705
XM_039796382.1 mRNA upstream 194 15157917 ~ 15159398 (+) True LOC120556705
XM_039796560.1 mRNA upstream 41434 15019473 ~ 15118158 (+) True LOC120556827
XM_039796562.1 mRNA upstream 41434 15019473 ~ 15118158 (+) False LOC120556827
XM_039796561.1 mRNA upstream 41434 15019473 ~ 15118158 (+) False LOC120556827
XM_039798746.1 mRNA downstream 31780 15197507 ~ 15208019 (+) True LOC120557981
XM_039798740.1 mRNA downstream 48906 15214633 ~ 15298359 (+) False LOC120557980
XM_039798741.1 mRNA downstream 48941 15214668 ~ 15298484 (+) True LOC120557980
XM_039798743.1 mRNA downstream 48943 15214670 ~ 15298484 (+) False LOC120557980
XM_039798739.1 mRNA downstream 50654 15216381 ~ 15298484 (+) False LOC120557980
XR_005638919.1 other upstream 285133 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 343156 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 821832 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 926067 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1631273 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 479784 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 799687 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 884178 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1267511 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1351809 16517536 ~ 16543580 (+) True G39116

Expression Profile