RNA id: XM_039796397.1


Basic Information

Item Value
RNA id XM_039796397.1
length 2127
RNA type mRNA
GC content 0.45
exon number 6
gene id fmoda
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14112976 ~ 14119447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGAGGGGGATGGCAGAAATGAAAGGAGAGCAGGGAGCGGAGGAACATGTTTTTTACAAAGTGTTTCTCAGAGTCCCCTTCAGTCCTGAGCACACTCTGAGAGAGAGCGGGAACAAGGAGGGCAAGCCTCTCTGAtcagTGAAGATTTGTATGACTGTGACCATGCGTGCGGTGACTGTCTTCCTCTTGTCTGCCCTTCTTCCACTCTCTTGCTCCCATGGACAAGACCCCTTCGCCTGGCTGTACGGCCCCCAGAGCCAAAGATTTGGCTCCCTGCAGGCAGACACCACAGGAGGGTGTCCAGATGAGTGTGATTGCCCTCCCTCCTTCCCAGTCGCCATGTACTGTGATGGGCGGGGCCTGACAGCCATGCCAACCATCCCCTCCCGTGTGAAATACTTGTACCTCCAAAACAATGCCATCACAGCTGTGTCCGACTCAGCTCTAGTAAATGCAACCAATCTGGTGTGGCTGATGATGCACCACAACCAGCTGACATCTGACGCCATTGGCAAGAAGgcaTTTATGCAGTTGCAGGGACTAGAGCGTTTATATCTACAACACAACAATTTGACTGGCTTTCCTTCAAACCTCCCTCGCACCCTGCGAGACCTGAGAATCAACCACAACAAGATTGAAAAGGTAACAGCTGCAGACCTAGAGGGAATGGATAATCTCACTATCCTGTATCTCCATGACAACGCTGTCACAGACATGGGAACATCCCTGAAGGCACTGAAATCCCTCACACTGCTGGACATCAGCAGCAACAAGTTGACTAAGGTCCCAGAGGCACTCCCCGAAAATCTGCACCAACTTTACCTGGAGTCCAACTCCATTGATTCTCTACCAGAGGGCTTCTTAGGCCGTTTCACTCAGCTGCAGTATGTCAGGATGGCTCACAATCAGCTAACAGACAAGGGTATCCCTGCCAACACCTTTAATGTGACTGGGCTGGTGGAGCTAGACCTGAGCTACAATAAACTGGAGAGAATCCCCCCTGTGAGCACCACACTGCAGCATCTCTATATGCAAGCCAACCAGATCAAAGAGTTCACTCTGGGTAGTTTCTGCAGCGTCGTGGATGTGACCAACTTCTCTAAGCTCCAGACGCTGCGACTGGATGGGAATGAGATCAGTCGCCAGGACATCCCAACAGAGTCGACCCTCTGCTTGCGCCTGGCTTCCAGCATTGAGGTCTAACTGTGCGTATGACACAATATGTGGCACTCTGCTCACAAACACAGAGCAGTTTACAACATGCATCgaaagtgtgaaataatttGTGTGATGTGCCAAAGCCAAAGCACAGCAGGGGCGACAATATCATTTAATCTCGAAAGCAGGTGGCAGCAGTTCTTACTGATATATCCACAGTTCACATCACAGCGAAAACAACAGTTGTCATATGTGGTTGTTTGCATGACAGCCGTTTTACAGCAATTGGAAAAGCTTTACCAGATATGTCATATTGCACAAGCTACTTTTAGATGTGAACTTCTCTAACAATTGGACGAATGACCAAGTCTGGTTTTATTTGATTAAATACAGGTAATAAGATACAGGAGCCCcatatgatgtttttttgtattgaaaATGATCTTACCATTACCCTCCTTATATGCTGTGAGGATCAATGATCTGTGTAATCAGtgttttttatctgtttttatctaTCTTCCTACAAAGCATGCCTTCCATTGTTTTGTCTGATAAGTTGATGATAAAAATATTATGTATTATGGATGATGTGAATTGTTTAATTTCGAACCATTAGCTGTTGTAGAAGCATGACAATATCTTCATCACTTCTCTGACGTCCATGTCCCAATATTTAGGTGCATTCATTTTTCTTTGTGATAAAAATGCTTTGACTGTTAGTGTCTGTAGAAGATGTTCTTGTTTCTTGAAATCAACTTCCCTCAGAGACATAGCTAGATATCTATGTTCCATGTGAAAAATATAtctacactgtactgtagtGAATCACGCAAAGGGCTTTGTGTGTATGAATTATGATTCTCGAATTACTGTATGCATTACATGGATTTGTCATCTTTCTGACAAAGGATTTATGTTTACCAGCCTATTgcagaataaataaaagttggGATTTTTAAAAAGA

Function

GO: NA

KEGG:

id description
K08121 FMOD; fibromodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51286 lncRNA upstream 67417 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 109789 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 120797 13991909 ~ 13992179 (+) True G38163
TU51232 lncRNA upstream 123135 13911329 ~ 13989841 (+) True G38156
XR_005638907.1 lncRNA upstream 335826 13775781 ~ 13777150 (+) True LOC120556887
TU51342 lncRNA downstream 73656 14193103 ~ 14195417 (+) True G38247
TU51373 lncRNA downstream 174486 14293933 ~ 14294157 (+) True G38274
TU51375 lncRNA downstream 186313 14305760 ~ 14308441 (+) True G38276
TU51433 lncRNA downstream 345527 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 373456 14492903 ~ 14494740 (+) True G38331
XM_039797311.1 mRNA upstream 67754 14006356 ~ 14045222 (+) True mapkapk2a
XM_039797308.1 mRNA upstream 124464 13978736 ~ 13988512 (+) True dyrk3
XM_039797309.1 mRNA upstream 124464 13979723 ~ 13988512 (+) False dyrk3
XM_039797310.1 mRNA upstream 124464 13981161 ~ 13988512 (+) False dyrk3
XM_039797307.1 mRNA upstream 136610 13964299 ~ 13976366 (+) True LOC120557195
XM_039796511.1 mRNA downstream 2168 14121615 ~ 14132772 (+) True slc6a14
XM_039798652.1 mRNA downstream 34684 14154131 ~ 14164411 (+) True lrrn2
XM_039798677.1 mRNA downstream 86722 14206169 ~ 14209691 (+) False rh50
XM_039798676.1 mRNA downstream 86790 14206237 ~ 14209691 (+) True rh50
XM_039798693.1 mRNA downstream 101575 14221022 ~ 14226084 (+) True LOC120557951
TU51174 other upstream 584657 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 744687 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 826665 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 904718 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 919656 13193247 ~ 13193320 (+) True LOC120558251
TU51331 other downstream 107768 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 215942 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 688905 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 745612 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1526064 15645511 ~ 15647851 (+) True G38834

Expression Profile