RNA id: XM_039796419.1


Basic Information

Item Value
RNA id XM_039796419.1
length 2871
RNA type mRNA
GC content 0.45
exon number 20
gene id LOC120556720
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17982485 ~ 17998537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCACTCTGGTGGAGTCATCATGGAGAGAGCTGTGGTGCAAGTCACCCTTTTTGGGCTGCTGCTGGTTTTGGCTAGCACACTACCAAACAAGGACGACTGGAACATCTACAGCTTTCACATCAACTCCACAGTAACCAGTCGTTATGCAACCACGGTCATCACAAGCCACGTGGCCAATCGCATGGACGACTCAAATGAAATAGAGTTCCAGGTCAGGATTCCCAAGAACGCTTTCATCAGTAAATTCAGAATGTTTATAGATGGCCAATGGTACGATGGTGTTGTGAAAGGTAAAGAGAAAGCTCAGCAGCAGTACACTGAGGCTGTGTCCCATGGCCAAAGCGCTGGGCTGGTCAGTTCTGTAGGGAGGACCCTCGAGGAATTTAAGACCTCTGTGACTGTGGCTGCCCACAAAAAGGTCACCTTTGAACTCACATATGAGGAGCTGCTGAAACGCAAGCTTGGCAAGTACGAGCTGCAAATCCACGCTCGACCCATGCAGCCTGTCAAAGACTTCAAGGTCGAtgtgtacattaatgagaaagCTGGCATCAATTTCATCGAGGTTAAAGGAGGACTAAGCACCAAAGCCCTGGCTAATGCTATCACCAGAACACATGCAGACAAACAGGCGTGGGTGTATTTCTACCTAACAGAGGaccaacagaaaacatgtgATGGCTGTGGAGAGCAGGGTATGAATGGAGATCTGGTTATTGTTTATGACGTCAACAGGGACACCTCACTTGGAGACATCAAGACATCAGCTGGATACTTTGTTCATCACTTTGCTCCATCTAGTCTGTCCCGCATACCAAAAAATGTTGTCTTCGTTATTGATCAAAGTGGCTCAATGAGTGGCAGAAAAATGCAACAGACCCGAATAGCATTAATCCACATCTTGAACGACCTGGCAGAGGATGACCACTTTGGTCTTATCACTTTTGATAGCAACATTTTTCACTGGAAAAGAGAACTTGTTCAGGCCAACAAGAAAAACCTGGAGAGTGCTAAGACATTTGCACAGAATATTCAAGCTAGAACAACCACAGACATTAACGCAGCAGTGTTGGAAGGAGCACGTATGCTGAATGCACATCCCAGAGAAGGTTCAGCGTCTATCGTCATACTTCTCACCGATGGAGACCCAACCTCAGGGGAGACAAATCTTGAACGAATACAATCAAATGTCAGAAGGCATATTGCAGACAAGTTCCCACTCTACTGTCTTGGTTTTGGTCATGGTGTCAATTTTAAGTTCCTTGAGAAGATGTCGCTGCAGAACAATGGTGTGGCACGATGGATTTACGAAGACTCTGACGAAGATTTACAGCTCAAGGGTTTCTCTGACGAGGTGGCCACTCCTCTGTTGACAGATGTGACAATGATCTATAATGGAGGGACCAATCTAACCCAGACTAACTTCAGCCAGTATTATAATGGCTCTGAGATTGTGGTGACCGGTCAGATCACTGACAACGACATTGAAACCTTCACTCCACAAGTTGTAGCCATTTCGAGGGATAGAAAAGTGACGTTTTCTGACACAAACGCCACCGTGGAGTACACTGGCACAGATTTTGACAGCCACGTCCAGAGGGTTTGGGCCTACCTCACAGTCAAACAGCTTCTGGAGAAAGAGCTGCTGTTATCTGGACCTGAGAAGGAGAATGTGAAGAAAGAGGCCTTGGAGCTGTCGCTGAAGTACAGCTTTGTAACCCCACTTACATCCATGGTGGTCACTAAGCCTCTGGGGGAGAAAACAGATGTGCTCCATAAACCTAAGGAAGGTGGAACAACACAAGGACACAGCACTGGAGTCCCCTTTCCACCCCCAGTCCAACACCCCATGAGTAAATATTTTGTTCTAGCAGTAGCATTAATAAGGTGGGTCTTATCTAATATGAGTCTTTCCGAGGGTTTGACGCCACagtggagaaaaagagaaggaaggaaggcaaccGAAACACAAGAAAGTTGGCGCACTGCAGAGTATGAAAGTGAAGTGATGCAGTGTTGGACTGAGCCTGAAGGCAAAACTCTTAGTTTGTTTTTCTACCTACCAATCTCACCTGTTGTCATGATGTACGATTTTGGATATAAGCGGCCAATAAAAGCTCCCCCTGAGGGTCAAGGGATACCAGGCTCTGCAGACTTCCCTTTGCAGGCACAAGTGTTGGTTAATGCAATATCTTCAAAagctttaaagaaaataaatgtatataactgGCTTTGTGTAAATGCATTCACAGATGATGTTGATTCTGATGATTATGAAGACGCAATGATTGTGCCTGACAAAACAACTAATGTTCCTCTTTCCCACAGGTTTCTGCTAAAAACTGAGAATCTGTCTCTTCCACTCTGCTTTGATGTCACTGGAGATGTTCGTCTTAAACTACTTCACCATCCCAACAGGCAGCTGTCTGTGAATGGTGAGCTTGATACAGTAATGAATGGAGGCTTCAGAAGGATTGTCATCCACTTCAAGACTGACCTTTATGTTGAGGTTGACACCAATGTCATCACTGTACGAGAGGGACAGACACTGACACGCCACACTGGACAGGCTTTCATCGCAGCCGGAAGTTTGATAGTGATTAGGCGGGACAAGCAAATAGATGTCGCAGCTCGAGAAACACGCATGGTCATCTATATTCATGAGAAGGATGGCGTAGAATTCCTCTGGCCGGTTTTGAAACAGCAGCCACTGGACAACAATGTTACAGGAATCATAGCTCTAAAGCCAGCAGTTTATGAGGAGGTGCAACAAACTCCCTCAACAAAAGTTAAGATCAAAGACCAGGAGATTGACGTTGTCAGGTACGTTGTGTTctgtattattactatttttgtctttcttttgtaG

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53269 lncRNA upstream 129119 17852516 ~ 17853366 (+) True G39665
TU53220 lncRNA upstream 196675 17785259 ~ 17785810 (+) True G39654
TU53197 lncRNA upstream 246579 17735486 ~ 17735906 (+) True G39638
TU53195 lncRNA upstream 253767 17727916 ~ 17728718 (+) False LOC120556838
TU53191 lncRNA upstream 260137 17715412 ~ 17722348 (+) True G39633
TU53572 lncRNA downstream 450310 18448847 ~ 18452500 (+) True G39861
XR_005638964.1 lncRNA downstream 545618 18544155 ~ 18547192 (+) True LOC120557393
TU53668 lncRNA downstream 572054 18570591 ~ 18570983 (+) True G39925
TU53669 lncRNA downstream 575145 18573682 ~ 18573909 (+) True G39926
TU53670 lncRNA downstream 575445 18573982 ~ 18574211 (+) True G39927
XM_039797894.1 mRNA upstream 3883 17965362 ~ 17978602 (+) True LOC120557499
XM_039797880.1 mRNA upstream 20759 17951089 ~ 17961726 (+) True LOC120557497
XM_039797895.1 mRNA downstream 1395 17999932 ~ 18007378 (+) True LOC120557500
XM_039796297.1 mRNA downstream 8919 18007456 ~ 18012488 (+) True LOC120556657
XM_039796296.1 mRNA downstream 8919 18007456 ~ 18012488 (+) False LOC120556657
XM_039797078.1 mRNA downstream 159652 18158189 ~ 18172130 (+) True rad54l2
XM_039799020.1 mRNA downstream 179206 18177743 ~ 18187751 (+) False rassf1
XR_005638976.1 other upstream 55598 17904698 ~ 17926887 (+) False wnk2
XR_005639081.1 other upstream 89065 17893293 ~ 17893420 (+) True LOC120558252
TU53107 other upstream 373269 17607930 ~ 17609216 (+) True G39581
TU52841 other upstream 784268 17193221 ~ 17198217 (+) False srsf3b
TU53438 other downstream 191078 18189615 ~ 18193926 (+) False tusc2b
TU53439 other downstream 191078 18189615 ~ 18193926 (+) False tusc2b
XR_005639014.1 other downstream 217169 18215706 ~ 18226039 (+) False LOC120557740
TU54005 other downstream 1326292 19324829 ~ 19326625 (+) True G40164
XR_005638959.1 other downstream 1618644 19617181 ~ 19632012 (+) False LOC120557344

Expression Profile