RNA id: XM_039796453.1


Basic Information

Item Value
RNA id XM_039796453.1
length 2007
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC120556739
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41991407 ~ 41998401 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gACGGCATGACATGGGACGCTCCGGGCTGCAGTCTTGTCCCAATGTGGCAGCACGCGTACACTGCTGCGAAactacagccaatcagagcgcaAGATACGGGCTGATGGGAAACCAGGGGAAAGGATCTTCTGTAACTTTACTGTTTGCCACACGGACTAAGTTGTTGTTGAACCTAGAAGAACGTAAAACACGCGTGGAACAGTCTGTCGTGTAAACAGGCGTAAACGCCGTAATCTttcctttttattctttgttctTTTACTGCAAAACAGCCACCAACAACTTGGAGAGCTTATTATTTCTGGCGGACGACCGTGGATGTGGTGCTCACACACTTTCACCTGGAGGAATCCGCGATGGTCGCCGGCCGGGCGGACAAAACAGCTTCCCCTGAGTGAGTTCAGCTACAGGACAGAAAAGTGGAAAACTGAACAACCTGCTGACACTCCAAACACTGAAGCTTcacttgaagaaaaaaatggcTTCCAGATCAGAGGAGGATCTCTGCTGTCCGGTCTGTCGGGAAGTCTTTAGAAATCCTGTTTTTCTATCatgtagccacagcttctgtaaagACTGTCTGCAGAGATGGTGGAGACAGAAACAAGCTAGAGAGTGTCCAGTCTGTAAGACGACCTCCTCAAATGCAAATCCACCTTGTAACCTGGTGTTGAAGAACCTGTGTGAGGCCTTCTTACtggagagagatcagagagcttcaggggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccagtgtgtCTCATCTGCAGAGATTCAGAAAAACACATAGACCACAAATTCAGACCCATCGAAGaagtaacacaaaaacacaggaaggAGCTTCAGGAAACTCTGCAGcccttaaagaagaagttaaagGGTTTTGAACAAATTAAGGTGAAGTTTGATCAGACAGCAAAACACATAAAGCTCCAGGCGCGACGCACAGAGACGCAGATTAAGGATCAGTATAAGAAGTTTCACCAGTttctagaagaagaagaggaggccaggatggctgcactgtgggaggaagaggagcagaagagtcggacaataaaggaaaagatggaggctctgagcagagagatagcagctctttcagacacagtcagagccacagaggagcagctgagagctgaagatgtctcattcctgatcaactacaaggctgcagtggCAAGAGTCcagcagcgccccctgctggatgatccacagctgctctcaggagctctgatagacgaggccggacacctgggcaacctgagcttctacatctggaacaagatgaaggacatggtctcctacactcctgtgattctggacccaaacactgctcAACAAAAAGTCTTCCTGTCTGAAGATCTGACCAGGGGGAGATGGGGACAGAGAAAGCTGCTTCCTGATAATCCAGAGAGGATTGATAAATACCCCTCTgtcctgggctctgagggctttAACTCAGGGACTCGCAGCTGGGATGTCGAGGTTGGAGACAGTACAGGCTGGTCACtgggtgtgttagcagagtctgCCCAGAGGAAGGGAAGCATACAGTCTGGGTTATGGAGAATAGGGTTCTTACAAGGTTATTACTCAGCAGGGTCACCATCAGATCCAGCCACTGGTCTCGTAGTGCAGAAGCAGTTCCAGAGGATcagagtgactctggactggaaCAGAGGAAAGCTGTCGTTCTCTGATGCTGATactaacacacagatacacaccttcacacacactttcactgagaagATGTTTCCATTCATTAGTCCTTGGTATAACGTCCCACTGAAGATATTACcagtgaaggtgtgtgtgacagtggagCAGAGCAGTTAGAGATAAAGAGGATGATTATATTCATGATGTTTaattcttaacccttgtgttatcctcaggtcaaatttgacccatttttacagtcctttatatcagaaatattggTTTTGTTCAACcgaattgcccaaaaata

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60491 lncRNA upstream 34309 41939243 ~ 41957098 (+) True LOC120556755
XR_005638887.1 lncRNA upstream 35736 41939214 ~ 41955671 (+) False LOC120556755
TU60469 lncRNA upstream 76104 41912164 ~ 41915303 (+) False G45190
TU60527 lncRNA downstream 169476 42167877 ~ 42170069 (+) True G45229
TU60542 lncRNA downstream 279884 42278285 ~ 42288948 (+) False G45237
TU60552 lncRNA downstream 350853 42349254 ~ 42350755 (+) True G45245
TU60554 lncRNA downstream 413804 42412205 ~ 42412427 (+) True G45247
TU60555 lncRNA downstream 423207 42421608 ~ 42429476 (+) True G45248
XM_039796451.1 mRNA upstream 3830 41963364 ~ 41987577 (+) True LOC120556737
XM_039796463.1 mRNA upstream 30237 41958293 ~ 41961170 (+) True LOC120556746
XM_039796471.1 mRNA upstream 79290 41905598 ~ 41912117 (+) False map1lc3a
XM_039796472.1 mRNA upstream 88776 41896995 ~ 41902631 (+) True dynlrb1
XM_039797172.1 mRNA upstream 223094 41751050 ~ 41768313 (+) True LOC120557139
XM_039796452.1 mRNA downstream 10051 42008452 ~ 42012332 (+) True LOC120556738
XM_039796458.1 mRNA downstream 14547 42012948 ~ 42014554 (+) True LOC120556744
XM_039797008.1 mRNA downstream 494672 42493073 ~ 42518058 (+) True sdc4
XM_039797009.1 mRNA downstream 494672 42493073 ~ 42518058 (+) False sdc4
XM_039797010.1 mRNA downstream 545674 42544075 ~ 42556438 (+) True LOC120557014
TU60468 other upstream 79321 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 79321 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 88789 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 111040 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 227756 41751003 ~ 41763651 (+) False LOC120557139
TU60535 other downstream 279884 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1511945 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1839983 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 1958426 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2362385 44360786 ~ 44361368 (+) False G45635

Expression Profile