RNA id: XM_039796463.1


Basic Information

Item Value
RNA id XM_039796463.1
length 1889
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120556746
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 41958293 ~ 41961170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCCTTTTCATTCTTTGTTATTTTACTGCAAAACAGCCACCAACAACTTGGAGAGCGGACGACCGTGGATGTGGTGCTCACACACTTTCACCTGGAGGAATCCGCGATGGTCGCCGGCCGGGCGGACAAAACAACTTCCCCTGGGTGAGTTCAGCTACAGGACAGAAAAGTGGAAAACTGAACAACCTGCTGACACTCCAAACACTGAAGCTTCACTCGAAGAAAAAAATGGCTTCCAGATCAGAGGAGGATCTCTGCTGTCCGGTCTGTCGGGAAGTCTTTAGAAATCCTGTTTTTCTATCatgtagccacagcttctgtaaagACTGTCTGCAGAGATCGTGGACACAGAAACCAACACAGGAGTGTCCAGTCTGTAAGACAACATCCTCAAATGCCAATCCACCTTGTAACCTGGTGTTAAAGAACCTGTGTGAGGCCTTCTTACtggagagagatcagagagcttcagaggctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccagtgtgtgtcATCTGTCTGCATTCAGAAAAACACTCCAACCACAGAATCAGACCCATCGATGAAGCTGCACGACAACACAGGAAGGAGCTTCAGGAAACTCTGGAGCCCTTAAAGAAGAAGATAAAGGTTTTTCAAAGAGTTAAAGTGAAATTTGATCAGACAGCAAAACACATGAAGGTCCAGGCCCGACGCACAGAGACGCAGATTAAGGAGCAGTTTAAGAAGCTTCACCAGTttctagaagaggaagaggaggccaggTTGGCTCCACTGATGGAGGATGAGGAGCAGAAGAGTaagaggatgaaggagaagatggagggtctgagcagagagatagcagctctttcagacacagtcagagccacagaggaggagctgagagctgaagacgtctcattcctgatcaactacaaggctgcagtggaaagagtccagcagcgccccctgctggatgatccacagctgctctcaggagctctgatagatgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaaggacatggtctcctacactcctgtgattctggacccaaacactgctcATCCTTATCTCATCCTGTCTGAAGATCTGACCAGTgtgagacaaggagagagaaaggaccttcctgataatccagagaggtttgataaATGCTGGTTTgtcctgggctctgagggctttAACTCAGGGAGTCACAGCTGGGATGTCGAGGTTGGAGACGGTAAACGCTGGTCACtgggtgtgttagcagagtctgCCCAGAGGAAGGGAAGCATACGGTCTGGATTATGGAGAATAAAGttctatgaaggtaaatactCAGCACGGTCAGCACCAGCTCCATCCATTGATCTCGTAGTGCAGAAGAAGCTCCAGAGGATcagagtgactctggactggaaCAGAGGAATGCTGTCATTCTCTGATGctgatactaacacacacatacacaccttcacacacactttctctgagAAGATGTTTCCATTCATTAAAACTTGGTATAAAGTCCCACTGAAGATATTACcagtgaaggtgtgtgtgacaGTAGAGCAGAGCAGTTAGAGATAAAGAGGATGATTATATTCATGATGTTTGTTTCTTAACGTTTGTGATATCCTcggttcaaatttgacccgtttttacAGTtctttatatcagaaatattggttttgttcaaccaaattgcccaaaaataacttggatgcatggatgtacaTTGTATGCATACAACATTCTTTGCAGGTAAAATTActgattacttccattgaattttggatgttttattcaattttatagcatttgaaaacaataattttacatggtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60491 lncRNA upstream 1195 41939243 ~ 41957098 (+) True LOC120556755
XR_005638887.1 lncRNA upstream 2622 41939214 ~ 41955671 (+) False LOC120556755
TU60469 lncRNA upstream 42990 41912164 ~ 41915303 (+) False G45190
TU60470 lncRNA upstream 42990 41912164 ~ 41915303 (+) False G45190
TU60471 lncRNA upstream 42990 41912164 ~ 41915303 (+) True G45190
TU60527 lncRNA downstream 206707 42167877 ~ 42170069 (+) True G45229
TU60542 lncRNA downstream 317115 42278285 ~ 42288948 (+) False G45237
TU60552 lncRNA downstream 388084 42349254 ~ 42350755 (+) True G45245
TU60554 lncRNA downstream 451035 42412205 ~ 42412427 (+) True G45247
TU60555 lncRNA downstream 460438 42421608 ~ 42429476 (+) True G45248
XM_039796471.1 mRNA upstream 46176 41905598 ~ 41912117 (+) False map1lc3a
XM_039796472.1 mRNA upstream 55662 41896995 ~ 41902631 (+) True dynlrb1
XM_039797172.1 mRNA upstream 189980 41751050 ~ 41768313 (+) True LOC120557139
XM_039797171.1 mRNA upstream 215136 41739325 ~ 41743157 (+) True LOC120557138
XM_039796466.1 mRNA upstream 330104 41625207 ~ 41628189 (+) False LOC120556749
XM_039796451.1 mRNA downstream 2194 41963364 ~ 41987577 (+) True LOC120556737
XM_039796453.1 mRNA downstream 30237 41991407 ~ 41998401 (+) True LOC120556739
XM_039796452.1 mRNA downstream 47282 42008452 ~ 42012332 (+) True LOC120556738
XM_039796458.1 mRNA downstream 51778 42012948 ~ 42014554 (+) True LOC120556744
XM_039797008.1 mRNA downstream 531903 42493073 ~ 42518058 (+) True sdc4
TU60468 other upstream 46207 41905529 ~ 41912086 (+) True map1lc3a
TU60467 other upstream 46207 41905607 ~ 41912086 (+) False map1lc3a
TU60460 other upstream 55675 41897022 ~ 41902618 (+) False dynlrb1
TU60464 other upstream 77926 41869730 ~ 41880367 (+) True G45186
TU60455 other upstream 194642 41751003 ~ 41763651 (+) False LOC120557139
TU60535 other downstream 317115 42278285 ~ 42301895 (+) True G45237
XR_005639071.1 other downstream 1549176 43510346 ~ 43510459 (+) True LOC120558241
TU60992 other downstream 1877214 43838384 ~ 43838852 (+) True G45557
TU61017 other downstream 1995657 43956827 ~ 43957173 (+) True G45577
TU61091 other downstream 2399616 44360786 ~ 44361368 (+) False G45635

Expression Profile