RNA id: XM_039796490.1


Basic Information

Item Value
RNA id XM_039796490.1
length 2440
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120556768
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9998996 ~ 10006173 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGGCTGGCTGGAACACGACTACACAGGGTTGGCTTGCTTGCAAACAGAGAGAGCCAACTGTCAGGTTGCAAGATGGCTAACGTTACGCTTCAGTCGTTTAACGTCTTTCTGACGGAAAGATTAACAGCAGCTGCGGTAGACATCTATGGATTCGTTGAGAAGACAATAATAGACTACCAGGAGGAGGTGTACCAAACAAAACTGGAGAACCAGAGGTTGCAGCGGCTGCTGGATTTGGTCTACAAACCAGAGATAAGACTGCACAGGGCAGATTCAAGGCAGATCGATTTGCCCACACCAACACAGGAGGTTTGTGCTCAGGAGCAGCAGATACAGAAGGAATGTATTCCAAGTGAGGCCAACAAGGAGCCAGTCATCCGGCCCATTAAAGAGGAACTGACTGAACTCTAGACCAGGTCTGTGGAGACACCTGAATGTCCGCCATAGAGCAGCGTTACAGACACGAATGTCCGGCATACATCAGTGTTACAGACACACTAACTCAGATTGTCACTGTTGGGAAGCATGAAGAAAATTAGAACCCAGACATCCTAACTCGAGTTATAATAGTCGGAGAGCACATGGAATATGAGGTGCCATCACAAGATCACCAACCGTTACCATCCTTTGGAGTATCTCCAGTGtacacaaagaagaaaaacatgttttttgtaatatttgCTGTCAGGCTTTTCTgagaaaagtcaaaaataaaatagcacCTCGCAGCTCATGCAAGTTTATCAAAGCCGACCAAAACAGTGTACACCTGCTTCACCTTTGACCGACACCAGGAGTCAAATGATCAGCCACATGAGAGCACACGCCCACACGCTGACGAGAAACCATTTTCCAGTCGCATTTGGGGTAACTGATACAAACTGAAAGTTCATATGAAATAACATATGAGGAGTCACACTAGAGAAAGGCCTTAAATCTGTGGGAAAAGCTTCAACAGATCTTCGACCATGACTAAACACGCCAGGATCAAACAGGGAGAACATGCCGTTTAAGTGCATGCAGTGCAGCCAGCGCTTTCCTCTGCTCTTTGCGTTCAAACAGCACATGAAGACGGTCCACGATGTCACCTTCTCTGTTGCTGTAACAATGCTGATGCTGACTTCCGTTTAAAGTTGAGAAGATACGCCGAGACTGATGGCTTCTTCTGATGATGAGAGCTTCTTTATAGACGCCAAACCGCCAACTGCACCTACATCCGCCGAGGAGATTCCCCCTAAACAGCAGGATTGGAACCCGGGTGCGTGCCAGGACGAGCCAGGACCCTCCCAGGTTAAAGTGGAGGAGGATGAGCAGGAGGAGGAACTGTGGATCAACGGCATGGATGAGCAACCTTCAGCGGAGGACAGCGATGACGGGGACGCCTTGACGAAAGAACTCATCCGAACAGTGCAGCAGTTGGAAGACTGtagagcagcagaggagagcaCAGAGCCGAAGCAAAGCCCTGCAGAGGATCCAGAGCACTCGGAAGAGAAGACGAGTACCACCTTATATCGCTGCCACATATGCAACTACATATTCACCAAAAAAACTGTGCTTACATGGCACCTCAAGACACACGAGAGCAAGTCACATGACAGCAAGGGGAACTTTGACTGTCACATATGTGGCAAACACATACCCTGTCAGAGCAATCTGCAGAACCACATGAGAGTACACACGGGAGAGAGACCCTACAGCTGCCATTTCTGTGGCAAGTGTTTTAAACTGAAAGGACACATGACAGAACACATAAggactcacacaggagagaagcctttcAGCTGTCACATCTGTGACAAATCTTTTAACAGGGGTTCAACTCTGAGAAAACACGTTTTTGCCAAACATAAAGAGGAGAGACCATACAAATGTGGGGATTGTGATGAGTTATTTACTGAAAGGTTGCTCATGAAGAAGCACATGCGAAAAGTTCACGGAGTCAAACTTTCCACGAGTCAAAGTCCTGCCTAGAAATTCAGGACAGAAGTCATATTAATGAAGTTATGTTGCACACAGTCTAAACGTTTCGATTATAGAGCCTGTGAGTTTTGGCAAGTGAGTTTTCACCTGTGAGTTATTTTACCAATACCAGAAGGTTTTATAGTTTAGTACACAAGCCAAACTTCTCAAATGTTGAATGTTGTCTAACATAAGCCatacaaaaactttgaaatgaTATTGAGTGATATGGTAAACTAGTCCTTTTAAATCAGGAATCTTTCTGATCAAAGAACAATTCTAAATATAATTGATTCCAACTTCCAACAGCTTTCCACTCAATACTACAGAACAGTACACACAATGAGGTTCAATAACCTGCCCTGTAGAGACTCCATagattaaagtgctcatattatgctccttgtcaggttcataattgtatttagaggttatatcagaaaaggtttacatggtttcatgttcaaaaaacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 111580 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 115965 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 265618 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 768040 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 768597 9230061 ~ 9230399 (-) True G37007
TU49834 lncRNA upstream 7554 10013727 ~ 10015053 (-) True G37145
TU49836 lncRNA upstream 9206 10015379 ~ 10016724 (-) True G37146
TU49849 lncRNA upstream 36074 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 37995 10044168 ~ 10044435 (-) True G37159
TU49856 lncRNA upstream 53631 10059804 ~ 10060407 (-) True G37165
XM_039799171.1 mRNA downstream 3241 9967082 ~ 9995755 (-) True LOC120558214
XM_039799172.1 mRNA downstream 24526 9967082 ~ 9974470 (-) False LOC120558214
XM_039799204.1 mRNA downstream 36453 9960248 ~ 9962543 (-) True LOC120558233
XM_039799206.1 mRNA downstream 36466 9957831 ~ 9962530 (-) False LOC120558233
XM_039799205.1 mRNA downstream 37311 9960248 ~ 9961685 (-) False LOC120558233
XM_039796491.1 mRNA upstream 1157 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA upstream 1157 10007330 ~ 10013617 (-) False zbtb49
XM_039797560.1 mRNA upstream 95556 10101729 ~ 10201751 (-) False slc2a9l2
XM_039797555.1 mRNA upstream 95556 10101729 ~ 10200743 (-) True slc2a9l2
XM_039797561.1 mRNA upstream 95556 10101729 ~ 10200742 (-) False slc2a9l2
TU49655 other downstream 603426 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 965329 8907782 ~ 9033667 (-) True LOC120558079
XR_005639053.1 other downstream 965337 8906439 ~ 9033659 (-) False LOC120558079
XR_005639075.1 other upstream 486117 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 488030 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 528781 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 926236 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 926236 10932409 ~ 10943628 (-) False fam219aa

Expression Profile