RNA id: XM_039796492.1


Basic Information

Item Value
RNA id XM_039796492.1
length 2908
RNA type mRNA
GC content 0.48
exon number 8
gene id zbtb49
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10007330 ~ 10013719 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGACTCATCAGATGTAGGTTTTTGATGGAGAAGTTGGAGCTGGGTGGTTCAGCAGCTGAGTGACCATGGACACCATGTCCAGCCACAGCTCCTACCTCCTGCAGCAGCTCCAGGAGCAGAGGATCCAGGGTCTGCTCTGTGACTGCATGCTGGTTGTCAAAGGTGTCTGCTTCAAAGCCCACAAAAAtgtcctggctgctttcagctccTATTTCAGGTCGTTATTCCAAAATTCCCCCAGTCAGAAGAATGAAGTGTTCAACTTGGTCATCCAGGATGTCAGTGGCATCGGCCAAATATTGGACTACATGTACACCTCCCATCTTGACATCAACCAAGATAATGTTCAAGCACTCCTGGACATTGCTCAGTGTTTGCAGGTTCCAAATGTTCAGAGCATGTGTAATGCTTTCCTCAAGCCTTGTCCTCCACCAGTGGAAATCCCGTCATTTTCTCTTCCAGGCATGCTGAGCTCTGAGCATGACTGCCTATTAGGGAGCAGTCTTCCTCATGATGTTGACCTCCACTGTCCCTCGGAAACCCAGAGGCCTGGCTTCAGCAGTGACATGGACCACACCAAAAGGATGCCTGTTTCTGTGCCTAATGGCAGCTCAAACTGTGACGCAACTAGCGGCACTCAGGCACCTGTAGAAAAACAGCTTGTCCATGGCTACAAGCTCCGCAACTTTTACAGTAAGCAGTACTTCAAACAAAGTGCACTCCAGACTAATAATGCAGCCCTAAATCAAGGCCCGTGCCCTTTGGTGCTGGTGGAAGAGCAGCCGTGTCAGCTCGGAGGCAGCCACACTCCTGTATGCTCAGGGAACACAGTTCAGCCCAATCCTTCCTGCACATCTGTGGCTGTTGAAAAGAACCCTGTCTCTTCCTTAACACCCTCAGATAATTTAAACACCCCCAACTCTAACTCAGCAGACTCCATGCTTAACAAGCCTGTGCGCCCGAAGAAGGCAGTGTACCTGAAGAAATATAACTACCTCCGGTCTCAGAAGGCTTtggaggagatgtttgctgaaTCAGCGAGTGAACCCGTCCTCAGCTGTCCCAAAGAGAGTCCTCAAGAAGAGTCTGTGGTCCAGACTAAAGCCTCAGAAGCTCCTGTTGAGGGCCTTAATGCAGGCAGGGAGCAGGTTACAGAGACAGCAACACAAGCACAACTTCCCAGTCCTCCACCTGCAAATCAAGAAGAGCAAAATCCGAAAACTGTGCCAGAGCTACCACAGCAGATAGGAAACAAGCAGTATTGTTGTGAGGTGTGTGGGAAGATCTTCAAACACCCCAGCAACCTGGAGCTGCACAAGCGCTCCCATACCGGTGAGAAGCCCTTTCAGTGTAATGTTTGTGGGAGAAACTTCTCACAGGCTGGAAATTTACAGACACATTTGCGGCGACATTCTGGTGAGAAACCTTACATCTGTGAGTTATGTGGTAAAAGCTTTACTGCATCAGGGGATGTCCACCGTCACAAAGtggtccacacaggagagaagccacaTCTGTGTGATATATGTGGTCGAGGATTTAACAACTTGAGTAATCTCAAGGAGCACAAGAGGACTCATGCCACAGACAAGACGTTCACATGTGACCAGTGTGGAAAATCCTTCAACACGCACAGAAAGCTTCTGAAGCACAAGGCCCGCCACACTGGGGAAAAACCACACAGCTGTGCCACCTGTGGGAAGTGCTTCATCGGCTCAGGGGACCTGCAGCGTCACATAAGATCACACACTGGTGAGAAACCATACATCTGTAGCGCCTGTGGAAAGAGCTTTACCCGCTCTGCCATGTTGAGAAGACACAACAACATGCACTGCAAGGGAGCCCCAGCCAACAGCCCGGTCACCGACAACTCTGACCCATCTCCTAGCTCGGATGAAGCGGCCTCGTTCCCCAAACCTGTCAGCCACAGTAAACCTCCTGCTGCAACTGGTGAGCAGCATTTCCCCAACATGATGTCCCATGCAGGGTTAGAGAAACCCTCACCGCCTACTCCTTCACCACCACAACCAACACCGCATATAGAGACTCCTCCTCCCAGCATGCACCTCAGCCCAGCTTCTACCCCAACCCCCCTTCCAGAGCTGCGCTCGCTGGTACCCCatcacctcctctcctccaaCCACCAGGAGAGAAGTGCAGCCTTAACTGCCACAGACCAGATGAAGCTTGCCAAAGCCCACCTGTCTCAGGAGGCTGTGTATGGGCCGTATGTGGAGAATGGGAATGTGTCAGTTGAGATGGGCAGAGGTCTGATGGGGAGACCCTACCTTCCTCCCACAGACAATCACTGCAGTTCCCTCACTTCTCCTAGCAGGCCCAATAGTGGGTCCTACAGGTCCACTGAAGGCCAGTTTATCTCCAGTGTAACTCTGTGGGGCCTGGCAATGAAAACTCTGCAGAATGATAATGACATGGAGTAGTAAAATGTTGCATTTGAGAGGATGTGCACTTTTCACTGATGTTTAATTAGTTTTGATTATTACTGTCTGGCTCTTGATCGGTTAAAACGTTCGTAACACACAAATGGTTGCTCCTATGATGAAGCAAACATTAAATAATGTGAATTATTCAGTGgaaatgtgtaatgtgtgtgttcagagttttcGCCATTACTCAAAATCAAAGTAAGTGCTTCCTAGTTTTTTGTATCTGAGAAAATCATGAGAATTGCTGTTACGCTGCACTTAAAACTTCCATGTCACCTAGTGTATCAATCTTGAATATTAGAGCCCATAGAGAAGCAGTGCAGCAGCAGGATTTTGGCCTCTGTGTATTAATTATACTCTTTCACTTTGTGTATATACTGCACTGCACTTTAAATCGTAAAGatatacattatatttaatGTATGTCAATTTTACCTAATAAAAAAATTTCATcacatca

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49800 lncRNA downstream 119914 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 124299 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 273952 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 776374 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 776931 9230061 ~ 9230399 (-) True G37007
TU49834 lncRNA upstream 110 10013727 ~ 10015053 (-) True G37145
TU49836 lncRNA upstream 1762 10015379 ~ 10016724 (-) True G37146
TU49849 lncRNA upstream 28630 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 30551 10044168 ~ 10044435 (-) True G37159
TU49856 lncRNA upstream 46187 10059804 ~ 10060407 (-) True G37165
XM_039796489.1 mRNA downstream 1157 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA downstream 1157 9998996 ~ 10006173 (-) True LOC120556768
XM_039799171.1 mRNA downstream 11575 9967082 ~ 9995755 (-) True LOC120558214
XM_039799172.1 mRNA downstream 32860 9967082 ~ 9974470 (-) False LOC120558214
XM_039799205.1 mRNA downstream 45645 9960248 ~ 9961685 (-) False LOC120558233
XM_039797560.1 mRNA upstream 88112 10101729 ~ 10201751 (-) False slc2a9l2
XM_039797555.1 mRNA upstream 88112 10101729 ~ 10200743 (-) True slc2a9l2
XM_039797561.1 mRNA upstream 88112 10101729 ~ 10200742 (-) False slc2a9l2
XM_039797559.1 mRNA upstream 88112 10101729 ~ 10200741 (-) False slc2a9l2
XM_039797557.1 mRNA upstream 88112 10101729 ~ 10196642 (-) False slc2a9l2
XR_005638890.1 other downstream 1157 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 611760 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 973663 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 973758 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 478673 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 480586 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 521337 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 918792 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 918792 10932409 ~ 10943628 (-) False fam219aa

Expression Profile